Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0008264 hypothetical protein PHAVU_008G173000g [Phaseolus vulgaris] Chr4 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG7G6180 LG-7 + View
Aethionema arabicum Aa31LG9G14590 LG-9 + View
Aethionema arabicum Aa31LG6G8900 LG-6 - View
Aethionema arabicum Aa31LG4G8200 LG-4 + View
Acer truncatum Atru.chr13.1204 chr13 - View
Acer truncatum Atru.chr3.2101 chr3 + View
Actinidia chinensis Actinidia29586 Lachesis_group7 - View
Actinidia chinensis Actinidia33142 Lachesis_group27 - View
Arabidopsis lyrata AL1G35692 scaffold_1 + View
Arabidopsis lyrata AL2G38470 scaffold_2 + View
Arabidopsis lyrata AL1G50640 scaffold_1 - View
Amaranthus hybridus Ah.05g170070 Putative pumilio homolog 7, chloroplastic (APUM-7) (AtPUM7) AmaHy_arrow1_Scaffold_5 - View
Aquilegia oxysepala Aqoxy6G00806 CHR06 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.A1VJLL PTHR12537//PTHR12537:SF64 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 11-RELATED arahy.Tifrunner.gnm1.Arahy.08 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.21V7FE PTHR12537//PTHR12537:SF64 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 11-RELATED arahy.Tifrunner.gnm1.Arahy.17 + View
Arabidopsis thaliana AT1G22240 pumilio 8 Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts. pumilio 8 (PUM8)%3B FUNCTIONS IN: RNA binding%2C binding%3B LOCATED IN: cytoplasm%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313)%2C Armadillo-like helical (InterPro:IPR011989)%2C Armadillo-type fold (InterPro:IPR016024)%3B BEST Arabidopsis thaliana protein match is: pumilio 7 (TAIR:AT1G78160.1)%3B Has 2896 Blast hits to 1722 proteins in 232 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 700%3B Fungi - 827%3B Plants - 762%3B Viruses - 0%3B Other Eukaryotes - 607 (source: NCBI BLink). Chr1 + View
Arabidopsis thaliana AT1G78160 pumilio 7 Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts. pumilio 7 (PUM7)%3B CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313)%2C Armadillo-like helical (InterPro:IPR011989)%2C Armadillo-type fold (InterPro:IPR016024)%3B BEST Arabidopsis thaliana protein match is: pumilio 8 (TAIR:AT1G22240.1)%3B Has 2852 Blast hits to 1667 proteins in 231 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 724%3B Fungi - 847%3B Plants - 715%3B Viruses - 0%3B Other Eukaryotes - 566 (source: NCBI BLink). Chr1 + View
Arabidopsis thaliana AT1G35730 pumilio 9 Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts. pumilio 9 (PUM9)%3B FUNCTIONS IN: RNA binding%2C binding%3B LOCATED IN: cytoplasm%3B EXPRESSED IN: flower%2C seed%3B EXPRESSED DURING: petal differentiation and expansion stage%2C E expanded cotyledon stage%3B CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313)%2C Armadillo-like helical (InterPro:IPR011989)%2C Armadillo-type fold (InterPro:IPR016024)%3B BEST Arabidopsis thaliana protein match is: pumilio 10 (TAIR:AT1G35750.1)%3B Has 2809 Blast hits to 1683 proteins in 229 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 628%3B Fungi - 837%3B Plants - 667%3B Viruses - 0%3B Other Eukaryotes - 677 (source: NCBI BLink). Chr1 - View
Brassica carinata BcaC05g26152 ChrC05 + View
Brassica carinata BcaB03g15983 ChrB03 + View
Brassica carinata BcaC06g34945 ChrC06 + View
Brassica carinata BcaC08g47390 ChrC08 + View
Brassica carinata BcaB05g25123 ChrB05 + View
Brassica carinata BcaB07g32246 ChrB07 + View
Brassica carinata BcaC03g15799 ChrC03 + View
Brassica napus C07p21490 C07 - View
Brassica napus A07p43450 A07 + View
Brassica napus A07p14600 A07 - View
Brassica napus C02p35450 C02 + View
Brassica napus A09p42530 A09 - View
Brassica napus C06p52110 C06 + View
Brassica napus C05p21370 C05 + View
Brassica napus A02p22070 A02 + View
Brassica oleracea BolC6t40234H C6 + View
Brassica oleracea BolC2t09558H C2 + View
Brassica oleracea BolC7t42675H C7 - View
Brassica oleracea BolC5t30834H C5 + View
Brassica rapa BraA07t29206Z A07 - View
Brassica rapa BraA07t31859Z A07 + View
Brassica rapa BraA02t07209Z A02 + View
Brassica rapa BraA09t39729Z A09 - View
Beta vulgaris EL10Ac1g01230 PTHR12537//PTHR12537:SF64 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 11-RELATED Chr1_EL10_PGA_scaffold3 - View
Capsicum annuum CAN.G1836.4 PGAv.1.6.scaffold1836 - View
Corylus avellana Haze_22258 Similar to APUM7: Putative pumilio homolog 7, chloroplastic (Arabidopsis thaliana OX%3D3702) 3 + View
Corylus avellana Haze_10687 Similar to APUM7: Putative pumilio homolog 7, chloroplastic (Arabidopsis thaliana OX%3D3702) 9 - View
Coffea canephora Cc10_g07310 Putative uncharacterized protein chr10 - View
Citrus clementina Ciclev10000337m.g scaffold_5 - View
Carpinus fangiana Cfa013628 Cfa05 + View
Cardamine hirsuta CARHR022590 Pumilio-family RNA binding protein Chr1 + View
Cardamine hirsuta CARHR259790 Pumilio RNA binding protein Chr8 + View
Cardamine hirsuta CARHR071620 Pumilio-family RNA binding protein Chr2 + View
Carya illinoinensis CiPaw.05G036200 PTHR12537//PTHR12537:SF64 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 11-RELATED Chr05 + View
Carya illinoinensis CiPaw.08G044400 PTHR12537//PTHR12537:SF64 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 11-RELATED Chr08 + View
Carya illinoinensis CiPaw.07G180700 PTHR12537:SF64 - PUMILIO HOMOLOG 11-RELATED Chr07 - View
Carica papaya Cpa.g.sc36.125 supercontig_36 + View
Chenopodium quinoa AUR62018902 APUM7: Putative pumilio homolog 7, chloroplastic C_Quinoa_Scaffold_3876 - View
Chenopodium quinoa AUR62027747 APUM7: Putative pumilio homolog 7, chloroplastic C_Quinoa_Scaffold_3784 + View
Capsella rubella Carub.0002s2505 PTHR12537//PTHR12537:SF64 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 11-RELATED scaffold_2 + View
Capsella rubella Carub.0001s2179 PTHR12537//PTHR12537:SF64 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 11-RELATED scaffold_1 + View
Daucus carota DCAR_008726 hypothetical protein DCARv2_Chr3 - View
Davidia involucrata Dinv13023 GWHABJS00000011 + View
Davidia involucrata Dinv44766 GWHABJS00000002 + View
Durio zibethinus Duzib248G0024 NW_019168048.1 - View
Durio zibethinus Duzib093G1416 NW_019167937.1 + View
Durio zibethinus Duzib041G0719 NW_019167826.1 - View
Durio zibethinus Duzib116G0937 NW_019167949.1 - View
Eutrema salsugineum Thhalv10028569m.g PTHR12537:SF64 - PUMILIO HOMOLOG 11-RELATED scaffold_3 - View
Eutrema salsugineum Thhalv10009853m.g PTHR12537:SF64 - PUMILIO HOMOLOG 11-RELATED scaffold_5 - View
Eutrema salsugineum Thhalv10018339m.g PTHR12537:SF64 - PUMILIO HOMOLOG 11-RELATED scaffold_9 - View
Fragaria x ananassa FAN08G3501 PTHR12537:SF64 - PUMILIO HOMOLOG 11-RELATED Fvb5-3 - View
Fragaria x ananassa FAN04G3206 PTHR12537//PTHR12537:SF64 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 11-RELATED Fvb5-4 - View
Fragaria x ananassa FAN18G1305 PTHR12537:SF64 - PUMILIO HOMOLOG 11-RELATED Fvb5-1 - View
Fragaria x ananassa FAN13G1000 PTHR12537//PTHR12537:SF64 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 11-RELATED Fvb5-2 - View
Fragaria vesca FvH4_5g37620 PTHR12537//PTHR12537:SF64 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 11-RELATED Fvb5 - View
Gossypium hirsutum Gohir.A06G036300 PTHR12537//PTHR12537:SF64 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 11-RELATED A06 - View
Gossypium hirsutum Gohir.D06G036800 PTHR12537//PTHR12537:SF64 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 11-RELATED D06 - View
Gossypium hirsutum Gohir.A05G227400 PTHR12537//PTHR12537:SF64 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 11-RELATED A05 - View
Gossypium hirsutum Gohir.D05G229900 PTHR12537//PTHR12537:SF64 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 11-RELATED D05 - View
Glycine max Glyma.14G172400 KOG2049 - Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) Gm14 + View
Glycine max Glyma.04G102900 KOG2049 - Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) Gm04 - View
Glycine max Glyma.13G088600 PTHR12537//PTHR12537:SF64 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 11-RELATED Gm13 + View
Glycine max Glyma.06G104100 PTHR12537//PTHR12537:SF64 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 11-RELATED Gm06 - View
Gossypium raimondii Gorai.010G041300 Chr10 - View
Gossypium raimondii Gorai.009G238000 Chr09 - View
Hydrangea macrophylla Hma1.2p1_0120F.1_g057340 Hma1.2p1_0120F.1 + View
Lupinus albus Lalb_Chr11g0065451 PTHR12537:SF64 - PUMILIO HOMOLOG 11-RELATED Lalb_Chr11 - View
Lupinus albus Lalb_Chr10g0102341 PTHR12537:SF64 - PUMILIO HOMOLOG 11-RELATED Lalb_Chr10 + View
Lotus japonicus Lj1g0001241 PTHR12537:SF64 - PUMILIO HOMOLOG 11-RELATED chr1 + View
Lonicera japonica Lj4A104G24 GWHAAZE00000004 - View
Magnolia biondii MBI02_g08729_MAGBIO AED:0.12 Chr02 + View
Magnolia biondii MBI05_g15586_MAGBIO AED:0.10 Chr05 + View
Malus domestica MD08G1181900 pumilio 7 Chr08 + View
Malus domestica MD15G1367200 pumilio 7 Chr15 + View
Manihot esculenta Manes.18G068100 Chromosome18 - View
Manihot esculenta Manes.02G153200 Chromosome02 - View
Medicago truncatula Medtr5g063650 pumilio-family RNA-binding repeatprotein chr5 + View
Nelumbo nucifera Nn1g05337 chr1 + View
Oryza sativa ssp. japonica Os09g0371800 Conserved hypothetical protein. chr09 + View
Petunia axillaris Peaxi162Scf00041g01316 pumilio 7 Peaxi162Scf00041 + View
Prunus persica Prupe.1G515100 PTHR12537:SF64 - PUMILIO HOMOLOG 11-RELATED Pp01 + View
Pisum sativum Psat2g073280 Pumilio-family RNA binding repeat chr2LG1 - View
Papaver somniferum PSO447G0319 NW_020621936.1 + View
Papaver somniferum PSO210G1285 NC_039359.1 + View
Populus trichocarpa Potri.002G095400 PTHR12537//PTHR12537:SF64 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 11-RELATED Chr02 + View
Phaseolus vulgaris Phvul.009G030400 PTHR12537:SF64 - PUMILIO HOMOLOG 11-RELATED Chr09 + View
Phaseolus vulgaris Phvul.008G173000 PTHR12537:SF64 - PUMILIO HOMOLOG 11-RELATED Chr08 + View
Quercus lobata QL12p036586 12 + View
Rosa chinensis RcHm_v2.0_Chr7g0239301 RcHm_v2.0_Chr7 - View
Rhododendron simsii Rhsim07G0201900 chr07 + View
Simmondsia chinensis Sc01g0000370 GWHAASQ00000001 + View
Simmondsia chinensis Sc23g0000190 GWHAASQ00000023 + View
Solanum lycopersicum Solyc04g073980.3 Pumilio 7 (AHRD V3.3 *-* A0A1P8AT22_ARATH) SL4.0ch04 + View
Schrenkiella parvula Sp1g30440 PTHR12537:SF64 - PUMILIO HOMOLOG 11-RELATED ch1-1 - View
Schrenkiella parvula Sp5g33280 KOG1488 - Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) ch5-7 + View
Schrenkiella parvula Sp1g19750 PTHR12537:SF64 - PUMILIO HOMOLOG 11-RELATED ch1-1 + View
Solanum pennellii Sopen04g029190 Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3 UTR of target mRNA transcripts. | pumilio 7 (PUM7) | CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat , Armadillo-like helical , Armadillo-type fold | BEST Arabidopsis thaliana protein match is: pumilio 8 Spenn-ch04 + View
Solanum tuberosum PGSC0003DMG400017721 APUM7 (Arabidopsis Pumilio 7); RNA binding / binding ST4.03ch04 + View
Selenicereus undatus Hund26959 Scaffold_2055 + View
Trochodendron aralioides TAR381G1180 group11 - View
Trochodendron aralioides TAR376G0184 group14 - View
Trochodendron aralioides TAR628G1001 group5 - View
Trochodendron aralioides TAR625G1120 group4 + View
Theobroma cacao Thecc.02G139300 Pumilio 7 Chromosome_2 + View
Theobroma cacao Thecc.08G108200 Pumilio 7 Chromosome_8 - View
Tarenaya hassleriana THA.LOC104800154 putative pumilio homolog 8%2C chloroplastic NW_010969032.1 - View
Tarenaya hassleriana THA.LOC104810822 putative pumilio homolog 7%2C chloroplastic NW_010960187.1 - View
Tarenaya hassleriana THA.LOC104825188 pumilio homolog 11-like NW_010960187.1 - View
Tripterygium wilfordii TWI36G0942 NC_052237.1 - View
Tripterygium wilfordii TWI56G0548 NC_052242.1 + View
Vaccinium macrocarpon vmacro04749 Similar to APUM7: Putative pumilio homolog 7, chloroplastic (Arabidopsis thaliana OX%3D3702) chr12_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1309G2407 CM024072.1 - View
Vigna mungo VMungo0647G0485 CM024073.1 - View
Vanilla planifolia HPP92_016811 pumilio 7 *-* CM028157.1 - View
Vitis vinifera GSVIVG01009020001 chr18 + View