Gene: AT1G35730
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G35730
- Transcript Identifier AT1G35730.2
- Gene Type Coding gene
- Location Chr1 : 13227324-13229814 : negative
Gene Family Information
- ID HOM05D000867
- #Genes/#Species 692/100
- Phylogenetic origin
- ID ORTHO05D000864
- #Genes/#Species 578/100
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT1G35730.2
- symbol PUM9
- Alias APUM9,pumilio 9
- uniprot Q1PFN9
Descriptions
- Description pumilio 9
- Computational description pumilio 9 (PUM9); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cytoplasm; EXPRESSED IN: flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 10 (TAIR:AT1G35750.1); Has 2809 Blast hits to 1683 proteins in 229 species: Archae - 0; Bacteria - 0; Metazoa - 628; Fungi - 837; Plants - 667; Viruses - 0; Other Eukaryotes - 677 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:1902039 | IMP | Gene Ontology | negative regulation of seed dormancy process | 1 |
| GO:0010608 | IBA | Gene Ontology | posttranscriptional regulation of gene expression | 2 |
| GO:0006417 | IEA | GOA Database | regulation of translation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003723 | IEA | Gene Ontology | RNA binding | |
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0003729 | IBA | Gene Ontology | mRNA binding | 2 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0005737 | IDA ISM, IBA | Gene Ontology | cytoplasm | 2 3 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |