Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0027403 Pumilio 2 isoform 1 [Theobroma cacao] Chr11 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG5G7140 LG-5 - View
Acer truncatum Atru.chr12.410 chr12 - View
Acer truncatum Atru.chr3.3963 chr3 - View
Actinidia chinensis Actinidia13888 Lachesis_group21 + View
Actinidia chinensis Actinidia02370 Lachesis_group3 + View
Actinidia chinensis Actinidia02931 Lachesis_group22 - View
Actinidia chinensis Actinidia34422 Lachesis_group15 - View
Arabidopsis lyrata AL4G23700 scaffold_4 + View
Amaranthus hybridus Ah.08g219910 AmaHy_arrow1_Scaffold_8 - View
Amaranthus hybridus Ah.10g036930 Pumilio homolog 1 (APUM-1) (AtPUM1) AmaHy_arrow1_Scaffold_10 + View
Amaranthus hybridus Ah.16g102500 Pumilio homolog 2 (APUM-2) (AtPUM2) AmaHy_arrow1_Scaffold_16 + View
Aquilegia oxysepala Aqoxy1G00888 CHR01 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.M6FCCP K17943 - pumilio RNA-binding family (PUM) arahy.Tifrunner.gnm1.Arahy.07 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.KDE77Y K17943 - pumilio RNA-binding family (PUM) arahy.Tifrunner.gnm1.Arahy.08 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.H68WEX K17943 - pumilio RNA-binding family (PUM) arahy.Tifrunner.gnm1.Arahy.18 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.XAI7HT K17943 - pumilio RNA-binding family (PUM) arahy.Tifrunner.gnm1.Arahy.17 - View
Arabidopsis thaliana AT2G29140 pumilio 3 Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts. pumilio 3 (PUM3)%3B FUNCTIONS IN: RNA binding%2C binding%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: Nucleic acid binding NABP (InterPro:IPR012940)%2C Pumilio RNA-binding repeat (InterPro:IPR001313)%2C Armadillo-like helical (InterPro:IPR011989)%2C Armadillo-type fold (InterPro:IPR016024)%3B BEST Arabidopsis thaliana protein match is: pumilio 1 (TAIR:AT2G29200.1)%3B Has 3920 Blast hits to 2027 proteins in 241 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 815%3B Fungi - 1344%3B Plants - 871%3B Viruses - 0%3B Other Eukaryotes - 882 (source: NCBI BLink). Chr2 + View
Amborella trichopoda ATR0559G113 AmTr_v1.0_scaffold00012 + View
Brassica carinata BcaB06g28284 ChrB06 + View
Brassica carinata BcaC02g08108 ChrC02 + View
Beta vulgaris EL10Ac2g04718 K17943 - pumilio RNA-binding family (PUM) Chr2_EL10_PGA_scaffold6 - View
Beta vulgaris EL10Ac7g16054 K17943 - pumilio RNA-binding family (PUM) Chr7_EL10_PGA_scaffold5 + View
Capsicum annuum CAN.G394.72 PGAv.1.6.scaffold394 + View
Capsicum annuum CAN.G786.2 PGAv.1.6.scaffold786 + View
Cannabis sativa CANSAT56G2063 NC_044371.1 - View
Cicer arietinum L. Ca_05873_v3 Ca_LG2_v3 - View
Cicer arietinum L. Ca_01308_v3 Ca_LG1_v3 - View
Corylus avellana Haze_24147 Similar to APUM1: Pumilio homolog 1 (Arabidopsis thaliana OX%3D3702) 6 + View
Corylus avellana Haze_17097 Similar to APUM2: Pumilio homolog 2 (Arabidopsis thaliana OX%3D3702) 11 + View
Coffea canephora Cc02_g07540 Pumilio homolog 1 chr2 - View
Coffea canephora Cc01_g13230 Pumilio homolog 2 chr1 + View
Citrus clementina Ciclev10030588m.g scaffold_4 - View
Citrus clementina Ciclev10027726m.g scaffold_8 + View
Ceratophyllum demersum CDE09G0859 7 - View
Ceratophyllum demersum CDE02G3367 1 + View
Carpinus fangiana Cfa011537 Cfa04 + View
Carpinus fangiana Cfa001446 Cfa01 - View
Carya illinoinensis CiPaw.14G066500 PTHR12537//PTHR12537:SF78 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 1-RELATED Chr14 - View
Carya illinoinensis CiPaw.13G090500 PTHR12537//PTHR12537:SF78 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 1-RELATED Chr13 - View
Carya illinoinensis CiPaw.02G185700 PTHR12537//PTHR12537:SF78 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 1-RELATED Chr02 + View
Citrullus lanatus ClCG02G019970 pumilio 3 LENGTH=964 CG_Chr02 - View
Citrullus lanatus ClCG07G003510 Pumilio-like protein CG_Chr07 + View
Cucumis melo MELO3C023878.2 pumilio homolog 1-like chr10 + View
Carica papaya Cpa.g.sc81.108 supercontig_81 - View
Carica papaya Cpa.g.sc1.431 supercontig_1 + View
Chenopodium quinoa AUR62001750 APUM1: Pumilio homolog 1 C_Quinoa_Scaffold_2716 - View
Chenopodium quinoa AUR62012123 APUM1: Pumilio homolog 1 C_Quinoa_Scaffold_1995 + View
Chenopodium quinoa AUR62040713 APUM1: Pumilio homolog 1 C_Quinoa_Scaffold_1465 - View
Capsella rubella Carub.0004s1021 K17943 - pumilio RNA-binding family (PUM) scaffold_4 - View
Cucumis sativus L. CsaV3_6G016670 pumilio homolog 1-like chr6 - View
Cucumis sativus L. CsaV3_5G008260 pumilio homolog 1-like chr5 + View
Daucus carota DCAR_005952 hypothetical protein DCARv2_Chr2 - View
Daucus carota DCAR_027601 hypothetical protein DCARv2_Chr8 + View
Davidia involucrata Dinv26036 GWHABJS00000009 - View
Davidia involucrata Dinv43118 GWHABJS00000085 - View
Davidia involucrata Dinv06763 GWHABJS00000004 + View
Davidia involucrata Dinv34272 GWHABJS00000007 + View
Durio zibethinus Duzib106G0980 NW_019168492.1 - View
Durio zibethinus Duzib168G1334 NW_019168159.1 - View
Durio zibethinus Duzib150G0564 NW_019167882.1 + View
Durio zibethinus Duzib114G0626 NW_019167926.1 - View
Durio zibethinus Duzib170G0812 NW_019167871.1 - View
Erigeron canadensis ECA233G2502 Conyza_canadensis_scaffold:1 - View
Erigeron canadensis ECA236G0109 Conyza_canadensis_scaffold:3 - View
Eucalyptus grandis Eucgr.G02951 Chr07 + View
Eucalyptus grandis Eucgr.B02314 Chr02 - View
Erythranthe guttata Migut.F00760 scaffold_6 - View
Eutrema salsugineum Thhalv10016184m.g K17943 - pumilio RNA-binding family (PUM) scaffold_10 + View
Fragaria x ananassa FAN11G0426 K17943 - pumilio RNA-binding family (PUM) Fvb3-4 - View
Fragaria x ananassa FAN03G1258 K17943 - pumilio RNA-binding family (PUM) Fvb7-3 - View
Fragaria x ananassa FAN10G0195 K17943 - pumilio RNA-binding family (PUM) Fvb7-1 + View
Fragaria x ananassa FAN06G1800 K17943 - pumilio RNA-binding family (PUM) Fvb7-2 - View
Fragaria x ananassa FAN25G0317 K17943 - pumilio RNA-binding family (PUM) Fvb3-1 - View
Fragaria x ananassa FAN21G2101 K17943 - pumilio RNA-binding family (PUM) Fvb3-2 + View
Fragaria x ananassa FAN01G0641 K17943 - pumilio RNA-binding family (PUM) Fvb7-4 - View
Fragaria x ananassa FAN01G0522 K17943 - pumilio RNA-binding family (PUM) Fvb7-4 - View
Fragaria x ananassa FAN06G0319 PTHR12537//PTHR12537:SF78 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 1-RELATED Fvb7-2 + View
Fragaria vesca FvH4_7g22880 PTHR12537:SF78 - PUMILIO HOMOLOG 1-RELATED Fvb7 + View
Gossypium hirsutum Gohir.A07G099800 PTHR12537//PTHR12537:SF78 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 1-RELATED A07 + View
Gossypium hirsutum Gohir.A05G093700 PTHR12537//PTHR12537:SF78 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 1-RELATED A05 - View
Gossypium hirsutum Gohir.D03G122100 PTHR12537//PTHR12537:SF78 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 1-RELATED D03 - View
Gossypium hirsutum Gohir.D05G094200 PTHR12537//PTHR12537:SF78 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 1-RELATED D05 - View
Gossypium hirsutum Gohir.D07G104100 PTHR12537//PTHR12537:SF78 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 1-RELATED D07 + View
Gossypium hirsutum Gohir.A03G044800 K17943 - pumilio RNA-binding family (PUM) A03 - View
Glycine max Glyma.11G136700 K17943 - pumilio RNA-binding family (PUM) Gm11 - View
Glycine max Glyma.15G035900 K17943 - pumilio RNA-binding family (PUM) Gm15 - View
Glycine max Glyma.12G060400 K17943 - pumilio RNA-binding family (PUM) Gm12 - View
Gossypium raimondii Gorai.003G129200 Chr03 - View
Gossypium raimondii Gorai.001G112000 Chr01 + View
Gossypium raimondii Gorai.009G097200 Chr09 - View
Gossypium raimondii Gorai.004G005400 Chr04 + View
Helianthus annuus HanXRQChr05g0135201 Probable pumilio 3 HanXRQChr05 - View
Helianthus annuus HanXRQChr08g0221001 Putative nucleic acid binding NABP; Armadillo-type fold HanXRQChr08 + View
Lupinus albus Lalb_Chr19g0137961 PTHR12537//PTHR12537:SF78 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 1-RELATED Lalb_Chr19 + View
Lupinus albus Lalb_Chr01g0003501 PTHR12537:SF78 - PUMILIO HOMOLOG 1-RELATED Lalb_Chr01 - View
Lupinus albus Lalb_Chr04g0251081 PTHR12537:SF78 - PUMILIO HOMOLOG 1-RELATED Lalb_Chr04 - View
Lupinus albus Lalb_Chr17g0346321 PTHR12537:SF78 - PUMILIO HOMOLOG 1-RELATED Lalb_Chr17 + View
Lotus japonicus LjContig00141g0002299 PTHR12537//PTHR12537:SF78 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 1-RELATED Contig00141 - View
Lonicera japonica Lj2C1068T5 GWHAAZE00000002 + View
Lonicera japonica Lj1C941G2 GWHAAZE00000001 + View
Lonicera japonica Lj1A147T86 GWHAAZE00000001 - View
Lonicera japonica Lj8A81T83 GWHAAZE00000008 - View
Lactuca sativa Lsat_1_v5_gn_8_73200 K17943 - pumilio RNA-binding family (PUM) Lsat_1_v8_lg_8 + View
Magnolia biondii MBI14_g08033_MAGBIO AED:0.05 Chr14 - View
Magnolia biondii MBI05_g29681_MAGBIO AED:0.09 Chr05 + View
Malus domestica MD07G1201900 pumilio 2 Chr07 + View
Malus domestica MD11G1096100 pumilio 1 Chr11 - View
Malus domestica MD03G1087000 pumilio 1 Chr03 - View
Malus domestica MD01G1136900 pumilio 2 Chr01 + View
Manihot esculenta Manes.10G027800 Chromosome10 - View
Manihot esculenta Manes.02G129900 Chromosome02 - View
Manihot esculenta Manes.01G170200 Chromosome01 - View
Medicago truncatula Medtr4g064670 pumilio Mpt5 protein, putative chr4 + View
Medicago truncatula Medtr2g097670 pumilio Mpt5 protein, putative chr2 + View
Medicago truncatula Medtr5g080390 pumilio-family RNA-binding repeatprotein chr5 + View
Nelumbo nucifera Nn2g13415 chr2 + View
Nelumbo nucifera Nn2g11178 chr2 + View
Nicotiana tabacum Nitab4.5_0001002g0080 Nucleic acid binding NABP Nitab4.5_0001002 + View
Oryza sativa ssp. japonica Os12g0574400 Similar to BPM. chr12 + View
Oryza sativa ssp. japonica Os01g0844800 Similar to Pumilio RBD (Fragment). Similar to predicted protein. Hypothetical conserved gene. chr01 + View
Punica granatum PGR102G0508 NC_045129.1 + View
Punica granatum PGR142G0995 NC_045128.1 + View
Prunus persica Prupe.6G071600 PTHR12537:SF78 - PUMILIO HOMOLOG 1-RELATED Pp06 - View
Prunus persica Prupe.2G238500 PTHR12537:SF78 - PUMILIO HOMOLOG 1-RELATED Pp02 + View
Papaver somniferum PSO339G3390 NC_039366.1 + View
Papaver somniferum PSO513G0041 NW_020650859.1 - View
Papaver somniferum PSO339G0343 NC_039366.1 + View
Papaver somniferum PSO063G3242 NC_039364.1 + View
Populus trichocarpa Potri.001G243400 PTHR12537//PTHR12537:SF78 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 1-RELATED Chr01 + View
Populus trichocarpa Potri.010G201100 PTHR12537//PTHR12537:SF78 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 1-RELATED Chr10 - View
Populus trichocarpa Potri.009G034900 PTHR12537//PTHR12537:SF78 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 1-RELATED Chr09 + View
Populus trichocarpa Potri.008G058300 PTHR12537//PTHR12537:SF78 - RNA BINDING PROTEIN PUMILIO-RELATED // PUMILIO HOMOLOG 1-RELATED Chr08 + View
Phaseolus vulgaris Phvul.011G062200 PTHR12537:SF78 - PUMILIO HOMOLOG 1-RELATED Chr11 - View
Phaseolus vulgaris Phvul.008G192100 Chr08 + View
Quercus lobata QL01p030641 1 - View
Quercus lobata QL08p060631 8 + View
Rosa chinensis RcHm_v2.0_Chr1g0368031 RcHm_v2.0_Chr1 + View
Rhododendron simsii Rhsim13G0078100 chr13 - View
Rhododendron simsii Rhsim09G0167400 chr09 + View
Rhododendron simsii Rhsim01G0231000 chr01 + View
Salix brachista Sabra08G0042900 GWHAAZH00000008 + View
Salix brachista Sabra10G0155100 GWHAAZH00000010 - View
Salix brachista Sabra09G0024900 GWHAAZH00000009 + View
Simmondsia chinensis Sc12g0001290 GWHAASQ00000012 - View
Simmondsia chinensis Sc10g0001760 GWHAASQ00000010 + View
Simmondsia chinensis Sc11g0007830 GWHAASQ00000011 - View
Sechium edule Sed0004941 LG07 + View
Sechium edule Sed0025975 LG01 + View
Sechium edule Sed0024049 LG04 + View
Solanum lycopersicum Solyc04g011580.4 Pumilio-like protein 3 (AHRD V3.3 *** A0A2G2XA68_CAPBA) SL4.0ch04 - View
Solanum lycopersicum Solyc06g076340.3 Pumilio-like protein 1 (AHRD V3.3 *** A0A2G2WNK2_CAPBA) SL4.0ch06 + View
Solanum lycopersicum Solyc06g005670.4 Pumilio-like protein 1 (AHRD V3.3 *** A0A2G2Z7W6_CAPAN) SL4.0ch06 + View
Schrenkiella parvula Sp4g11960 PTHR12537:SF78 - PUMILIO HOMOLOG 1-RELATED ch4-6 + View
Solanum pennellii Sopen06g001650 Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3 UTR of target mRNA transcripts. | pumilio 1 (PUM1) | FUNCTIONS IN: RNA binding, binding | LOCATED IN: cellular_component unknown | EXPRESSED IN: cultured cell | CONTAINS InterPro DOMAIN/s: Nucleic acid binding NABP , Pumilio RNA-binding repeat , Armadillo-like helical , Armadillo-type fold | BEST Arabidopsis thaliana protein match is: pumilio 3 Spenn-ch06 + View
Solanum pennellii Sopen06g032750 Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3 UTR of target mRNA transcripts. | pumilio 1 (PUM1) | FUNCTIONS IN: RNA binding, binding | LOCATED IN: cellular_component unknown | EXPRESSED IN: cultured cell | CONTAINS InterPro DOMAIN/s: Nucleic acid binding NABP , Pumilio RNA-binding repeat , Armadillo-like helical , Armadillo-type fold | BEST Arabidopsis thaliana protein match is: pumilio 3 Spenn-ch06 + View
Solanum tuberosum PGSC0003DMG400002143 Pumilio ST4.03ch06 - View
Solanum tuberosum PGSC0003DMG400006350 Pumilio ST4.03ch04 - View
Solanum tuberosum PGSC0003DMG400030327 Pumilio ST4.03ch06 + View
Selenicereus undatus Hund13786 Scaffold_33679 + View
Selenicereus undatus Hund16066 Scaffold_33677 - View
Selenicereus undatus Hund18893 Scaffold_33675 - View
Selenicereus undatus Hund04928 Scaffold_19641 - View
Trochodendron aralioides TAR633G2293 group2 - View
Trochodendron aralioides TAR636G1527 group1 + View
Trochodendron aralioides TAR369G0784 group18 - View
Theobroma cacao Thecc.10G037700 Pumilio 2 Chromosome_10 + View
Theobroma cacao Thecc.09G317200 Pumilio 2 Chromosome_9 - View
Tarenaya hassleriana THA.LOC104810760 pumilio homolog 2-like NW_010965304.1 + View
Tarenaya hassleriana THA.LOC104810041 pumilio homolog 3-like NW_010965122.1 + View
Trifolium pratense TPR.G23618 Tp57577_TGAC_v2_LG3 - View
Tripterygium wilfordii TWI79G1132 NC_052238.1 - View
Tripterygium wilfordii TWI75G1335 NC_052253.1 - View
Tripterygium wilfordii TWI31G0953 NC_052233.1 - View
Tripterygium wilfordii TWI63G0047 NC_052240.1 + View
Vaccinium macrocarpon vmacro10221 Similar to APUM2: Pumilio homolog 2 (Arabidopsis thaliana OX%3D3702) chr8_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro03039 Similar to APUM1: Pumilio homolog 1 (Arabidopsis thaliana OX%3D3702) chr9_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1127G0541 CM024076.1 - View
Vigna mungo VMungo0647G0740 CM024073.1 + View
Vitis vinifera GSVIVG01024919001 chr6 + View
Vitis vinifera GSVIVG01016507001 chr13 + View