Paralogs (intra-species colinear regions)
No paralogous anchorpoints available
Orthologs (inter-species colinear regions)
Organism | Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|---|
Aethionema arabicum | Aa31LG10G7610 | LG-10 | + | View | |
Aethionema arabicum | Aa31LG5G21300 | LG-5 | + | View | |
Acer truncatum | Atru.chr8.1466 | chr8 | + | View | |
Actinidia chinensis | Actinidia05410 | Lachesis_group5 | - | View | |
Arabidopsis lyrata | AL4G32270 | scaffold_4 | + | View | |
Arabidopsis lyrata | AL5G33370 | scaffold_5 | + | View | |
Avicennia marina | MSTRG.19297 | ScioBoG_25048_HRSCAF_25167 | - | View | |
Amaranthus hybridus | Ah.08g210460 | AmaHy_arrow1_Scaffold_8 | + | View | |
Aquilegia oxysepala | Aqoxy2G01084 | CHR02 | + | View | |
Arachis hypogaea | arahy.Tifrunner.gnm1.ann1.I8M745 | K02927 - large subunit ribosomal protein L40e (RP-L40e, RPL40) | arahy.Tifrunner.gnm1.Arahy.12 | + | View |
Arachis hypogaea | arahy.Tifrunner.gnm1.ann1.L94IR5 | K02927 - large subunit ribosomal protein L40e (RP-L40e, RPL40) | arahy.Tifrunner.gnm1.Arahy.02 | + | View |
Arabidopsis thaliana | AT3G52590 | ubiquitin extension protein 1 Ubiquitin extension protein ubiquitin extension protein 1 (UBQ1)%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: response to water deprivation%2C protein ubiquitination%2C embryo development ending in seed dormancy%3B LOCATED IN: ribosome%2C intracellular%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L40e (InterPro:IPR001975)%2C Ubiquitin subgroup (InterPro:IPR019956)%2C Ubiquitin conserved site (InterPro:IPR019954)%2C Ubiquitin (InterPro:IPR000626)%2C Ubiquitin supergroup (InterPro:IPR019955)%3B BEST Arabidopsis thaliana protein match is: Ubiquitin supergroup%3BRibosomal protein L40e (TAIR:AT2G36170.1)%3B Has 12437 Blast hits to 7147 proteins in 724 species: Archae - 0%3B Bacteria - 19%3B Metazoa - 5493%3B Fungi - 1424%3B Plants - 3085%3B Viruses - 174%3B Other Eukaryotes - 2242 (source: NCBI BLink). | Chr3 | + | View |
Arabidopsis thaliana | AT2G36170 | 60S ribosomal protein L40-1 Ubiquitin supergroup%3BRibosomal protein L40e%3B FUNCTIONS IN: structural constituent of ribosome%3B INVOLVED IN: translation%3B LOCATED IN: cytosolic large ribosomal subunit%2C nucleolus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L40e (InterPro:IPR001975)%2C Ubiquitin subgroup (InterPro:IPR019956)%2C Ubiquitin conserved site (InterPro:IPR019954)%2C Ubiquitin (InterPro:IPR000626)%2C Ubiquitin supergroup (InterPro:IPR019955)%3B BEST Arabidopsis thaliana protein match is: ubiquitin extension protein 1 (TAIR:AT3G52590.1)%3B Has 12454 Blast hits to 7164 proteins in 726 species: Archae - 0%3B Bacteria - 25%3B Metazoa - 5499%3B Fungi - 1428%3B Plants - 3086%3B Viruses - 174%3B Other Eukaryotes - 2242 (source: NCBI BLink). | Chr2 | + | View |
Amborella trichopoda | ATR0820G129 | AmTr_v1.0_scaffold00040 | - | View | |
Brassica carinata | BcaC07g39629 | ChrC07 | + | View | |
Brassica carinata | BcaB02g09379 | ChrB02 | - | View | |
Brassica carinata | BcaC02g09240 | ChrC02 | - | View | |
Brassica carinata | BcaC02g07626 | ChrC02 | - | View | |
Brassica napus | C04p40390 | C04 | - | View | |
Brassica napus | C03p23390 | C03 | + | View | |
Brassica napus | C04p12000 | C04 | - | View | |
Brassica napus | A09p45690 | A09 | + | View | |
Brassica napus | C08p27890 | C08 | + | View | |
Brassica napus | A05p09650 | A05 | - | View | |
Brassica oleracea | BolC4t22844H | C4 | - | View | |
Brassica oleracea | BolC4t25619H | C4 | - | View | |
Brassica oleracea | BolC8t50404H | C8 | + | View | |
Brassica oleracea | BolC4t27999H | C4 | + | View | |
Brassica rapa | BraA03t11247Z | A03 | + | View | |
Brassica rapa | BraA05t19919Z | A05 | - | View | |
Beta vulgaris | EL10Ac7g16889 | K02927//K08770 - large subunit ribosomal protein L40e (RP-L40e, RPL40) // ubiquitin C (UBC) | Chr7_EL10_PGA_scaffold5 | + | View |
Citrus clementina | Ciclev10013083m.g | scaffold_6 | + | View | |
Cardamine hirsuta | CARHR130400 | Ubiquitin, putative | Chr4 | + | View |
Cardamine hirsuta | CARHR162410 | Ubiquitin, putative | Chr5 | + | View |
Carya illinoinensis | CiPaw.10G011700 | K02927//K02977//K08770//K12158 - large subunit ribosomal protein L40e (RP-L40e, RPL40) // small subunit ribosomal protein S27Ae (RP-S27Ae, RPS27A) // ubiquitin C (UBC) // ubiquitin-like protein Nedd8 (NEDD8) | Chr10 | - | View |
Carya illinoinensis | CiPaw.09G016200 | KOG0003 - Ubiquitin/60s ribosomal protein L40 fusion | Chr09 | - | View |
Carica papaya | Cpa.g.sc104.105 | supercontig_104 | + | View | |
Chenopodium quinoa | AUR62037008 | UBICEP52-7: Ubiquitin-60S ribosomal protein L40 | C_Quinoa_Scaffold_1847 | + | View |
Capsella rubella | Carub.0005s1901 | K02927 - large subunit ribosomal protein L40e (RP-L40e, RPL40) | scaffold_5 | + | View |
Capsella rubella | Carub.0004s1793 | K02927 - large subunit ribosomal protein L40e (RP-L40e, RPL40) | scaffold_4 | + | View |
Davidia involucrata | Dinv31710 | GWHABJS00000015 | - | View | |
Durio zibethinus | Duzib093G1685 | NW_019167937.1 | + | View | |
Durio zibethinus | Duzib106G0918 | NW_019168492.1 | + | View | |
Durio zibethinus | Duzib128G1322 | NW_019168481.1 | + | View | |
Eucalyptus grandis | Eucgr.K02560 | Chr11 | + | View | |
Eutrema salsugineum | Thhalv10017417m.g | K02927 - large subunit ribosomal protein L40e (RP-L40e, RPL40) | scaffold_10 | + | View |
Fragaria x ananassa | FAN14G4079 | K02927//K08770 - large subunit ribosomal protein L40e (RP-L40e, RPL40) // ubiquitin C (UBC) | Fvb6-1 | + | View |
Fragaria vesca | FvH4_6g19302 | K02927 - large subunit ribosomal protein L40e (RP-L40e, RPL40) | Fvb6 | - | View |
Gossypium hirsutum | Gohir.D09G133900 | K02927//K08770 - large subunit ribosomal protein L40e (RP-L40e, RPL40) // ubiquitin C (UBC) | D09 | + | View |
Gossypium hirsutum | Gohir.D11G338300 | K02927 - large subunit ribosomal protein L40e (RP-L40e, RPL40) | D11 | + | View |
Gossypium hirsutum | Gohir.A09G140600 | K02927//K08770 - large subunit ribosomal protein L40e (RP-L40e, RPL40) // ubiquitin C (UBC) | A09 | - | View |
Glycine max | Glyma.03G197600 | K02927 - large subunit ribosomal protein L40e (RP-L40e, RPL40) | Gm03 | - | View |
Glycine max | Glyma.19G195500 | K02927 - large subunit ribosomal protein L40e (RP-L40e, RPL40) | Gm19 | - | View |
Gossypium raimondii | Gorai.007G368200 | Chr07 | + | View | |
Gossypium raimondii | Gorai.006G153300 | Chr06 | + | View | |
Lupinus albus | Lalb_Chr20g0111621 | K02927 - large subunit ribosomal protein L40e (RP-L40e, RPL40) | Lalb_Chr20 | + | View |
Lupinus albus | Lalb_Chr01g0018041 | K02927 - large subunit ribosomal protein L40e (RP-L40e, RPL40) | Lalb_Chr01 | + | View |
Lotus japonicus | Lj5g0018495 | K02927 - large subunit ribosomal protein L40e (RP-L40e, RPL40) | chr5 | + | View |
Lotus japonicus | Lj5g0014204 | K08770 - ubiquitin C (UBC) | chr5 | - | View |
Lotus japonicus | Lj1g0002368 | K02927 - large subunit ribosomal protein L40e (RP-L40e, RPL40) | chr1 | + | View |
Malus domestica | MD12G1028600 | ubiquitin extension protein 1 | Chr12 | - | View |
Malus domestica | MD14G1028800 | ubiquitin extension protein 1 | Chr14 | - | View |
Manihot esculenta | Manes.08G027400 | Chromosome08 | - | View | |
Manihot esculenta | Manes.09G053400 | Chromosome09 | + | View | |
Medicago truncatula | Medtr7g105080 | ubiquitin-60S ribosomal L40 fusion protein | chr7 | - | View |
Medicago truncatula | Medtr1g059690 | ubiquitin-60S ribosomal L40 fusion protein | chr1 | + | View |
Nelumbo nucifera | Nn6g34831 | chr6 | + | View | |
Nelumbo nucifera | Nn2g14213 | chr2 | - | View | |
Punica granatum | PGR142G3787 | NC_045128.1 | - | View | |
Prunus persica | Prupe.7G102800 | K02927 - large subunit ribosomal protein L40e (RP-L40e, RPL40) | Pp07 | + | View |
Populus trichocarpa | Potri.016G077000 | K02927 - large subunit ribosomal protein L40e (RP-L40e, RPL40) | Chr16 | + | View |
Phaseolus vulgaris | Phvul.001G191700 | K02927 - large subunit ribosomal protein L40e (RP-L40e, RPL40) | Chr01 | - | View |
Quercus lobata | QL07p038382 | 7 | + | View | |
Rosa chinensis | RcHm_v2.0_Chr3g0474431 | RcHm_v2.0_Chr3 | - | View | |
Rhododendron simsii | Rhsim03G0070800 | chr03 | + | View | |
Schrenkiella parvula | Sp4g18400 | K02927//K08770 - large subunit ribosomal protein L40e (RP-L40e, RPL40) // ubiquitin C (UBC) | ch4-6 | + | View |
Schrenkiella parvula | Sp3g09740 | K02927//K08770 - large subunit ribosomal protein L40e (RP-L40e, RPL40) // ubiquitin C (UBC) | ch3-1 | - | View |
Theobroma cacao | Thecc.05G093500 | Ubiquitin extension protein 1 | Chromosome_5 | - | View |
Tarenaya hassleriana | THA.LOC104816592 | ubiquitin-60S ribosomal protein L40 | NW_010965775.1 | - | View |
Tarenaya hassleriana | THA.LOC104823496 | ubiquitin-60S ribosomal protein L40 | NW_010966881.1 | - | View |
Trifolium pratense | TPR.G23352 | Tp57577_TGAC_v2_LG6 | + | View | |
Trifolium pratense | TPR.G14793 | Tp57577_TGAC_v2_LG1 | + | View | |
Tripterygium wilfordii | TWI74G0685 | NC_052234.1 | - | View | |
Tripterygium wilfordii | TWI77G0913 | NC_052236.1 | + | View | |
Vigna mungo | VMungo1383G0865 | CM024070.1 | - | View | |
Vitis vinifera | GSVIVG01033876001 | chr8 | + | View |