Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0032812 PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein 3, partial [Vitis vinifera] Chr9 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG4G8870 LG-4 + View
Acer truncatum Atru.chr13.1981 chr13 + View
Actinidia chinensis Actinidia17761 Lachesis_group26 + View
Actinidia chinensis Actinidia15617 Lachesis_group28 + View
Arabidopsis lyrata AL1G36300 scaffold_1 + View
Arabidopsis lyrata AL1G48640 scaffold_1 - View
Aquilegia oxysepala Aqoxy5G02010 CHR05 + View
Aquilegia oxysepala Aqoxy6G00439 CHR06 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.PX9GP5 K13126 - polyadenylate-binding protein (PABPC) arahy.Tifrunner.gnm1.Arahy.19 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.684WH3 K13126 - polyadenylate-binding protein (PABPC) arahy.Tifrunner.gnm1.Arahy.09 - View
Arabidopsis thaliana AT1G22760 poly(A) binding protein 3 Putative poly(A) binding protein May there fore function in posttranscriptional regulation%2C including mRNA turnover and translational initiation. Expression detected only in floral organs. poly(A) binding protein 3 (PAB3)%3B CONTAINS InterPro DOMAIN/s: Polyadenylate-binding protein/Hyperplastic disc protein (InterPro:IPR002004)%2C RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Polyadenylate binding protein%2C human types 1%2C 2%2C 3%2C 4 (InterPro:IPR006515)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: poly(A)-binding protein 5 (TAIR:AT1G71770.2)%3B Has 52215 Blast hits to 23458 proteins in 902 species: Archae - 22%3B Bacteria - 3112%3B Metazoa - 26727%3B Fungi - 6853%3B Plants - 9433%3B Viruses - 0%3B Other Eukaryotes - 6068 (source: NCBI BLink). Chr1 + View
Arabidopsis thaliana AT1G34140 poly(A) binding protein 1 polyadenylate-binding protein%2C putative / PABP%2C putative%2C non-consensus splice donor TA at exon 1%3B similar to polyadenylate-binding protein (poly(A)-binding protein) from (Triticum aestivum) GI:1737492%2C (Nicotiana tabacum) GI:7673355%2C %7BArabidopsis thaliana%7D SP:P42731%3B contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM). Only member of the class IV PABP family. poly(A) binding protein 1 (PAB1)%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%2C RNA recognition%2C domain 1 (InterPro:IPR003954)%3B BEST Arabidopsis thaliana protein match is: poly(A)-binding protein 5 (TAIR:AT1G71770.2)%3B Has 11 Blast hits to 11 proteins in 5 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1%3B Fungi - 0%3B Plants - 8%3B Viruses - 0%3B Other Eukaryotes - 2 (source: NCBI BLink). Chr1 - View
Beta vulgaris EL10Ac1g01627 K13126 - polyadenylate-binding protein (PABPC) Chr1_EL10_PGA_scaffold3 - View
Cannabis sativa CANSAT25G3122 NC_044370.1 + View
Cicer arietinum L. Ca_10648_v3 Ca_LG4_v3 + View
Corylus avellana Haze_17825 Similar to PAB3: Polyadenylate-binding protein 3 (Arabidopsis thaliana OX%3D3702) 7 - View
Citrus clementina Ciclev10003530m.g scaffold_5 - View
Carpinus fangiana Cfa018263 Cfa07 + View
Cardamine hirsuta CARHR291020 Polyadenylate-binding protein, putative NSCAFB.269 + View
Cardamine hirsuta CARHR023120 Polyadenylate-binding protein, putative Chr1 + View
Carya illinoinensis CiPaw.15G011500 K13126 - polyadenylate-binding protein (PABPC) Chr15 - View
Carya illinoinensis CiPaw.16G007600 PTHR24012:SF349 - POLYADENYLATE-BINDING PROTEIN 2-RELATED Chr16 - View
Citrullus lanatus ClCG08G007210 Polyadenylate-binding protein 5 CG_Chr08 + View
Cucumis melo MELO3C019964.2 Polyadenylate-binding protein chr03 - View
Carica papaya Cpa.g.sc26.121 supercontig_26 - View
Chenopodium quinoa AUR62034914 PAB5: Polyadenylate-binding protein 5 C_Quinoa_Scaffold_3617 - View
Chenopodium quinoa AUR62026616 PAB5: Polyadenylate-binding protein 5 C_Quinoa_Scaffold_2081 + View
Capsella rubella Carub.0001s2227 K13126 - polyadenylate-binding protein (PABPC) scaffold_1 + View
Capsella rubella Carub.0001s3221 PTHR24012:SF420 - POLYADENYLATE-BINDING PROTEIN 1 scaffold_1 - View
Cucumis sativus L. CsaV3_6G004880 Polyadenylate-binding protein chr6 + View
Davidia involucrata Dinv02472 GWHABJS00000011 - View
Davidia involucrata Dinv41023 GWHABJS00000002 - View
Durio zibethinus Duzib041G0704 NW_019167826.1 - View
Eutrema salsugineum Thhalv10009520m.g PTHR24012:SF491 - FOUND IN NEURONS, ISOFORM A-RELATED scaffold_5 + View
Fragaria x ananassa FAN24G0863 K13126 - polyadenylate-binding protein (PABPC) Fvb2-2 - View
Fragaria x ananassa FAN20G2005 K13126 - polyadenylate-binding protein (PABPC) Fvb2-3 - View
Fragaria x ananassa FAN15G3568 K13126 - polyadenylate-binding protein (PABPC) Fvb2-4 + View
Fragaria vesca FvH4_2g12840 K13126 - polyadenylate-binding protein (PABPC) Fvb2 + View
Glycine max Glyma.20G171200 K13126 - polyadenylate-binding protein (PABPC) Gm20 - View
Glycine max Glyma.16G160800 PTHR24012:SF349 - POLYADENYLATE-BINDING PROTEIN 2-RELATED Gm16 + View
Gossypium raimondii Gorai.010G134400 Chr10 - View
Hydrangea macrophylla Hma1.2p1_0358F.1_g134880 Hma1.2p1_0358F.1 - View
Lupinus albus Lalb_Chr19g0129981 KOG0123 - Polyadenylate-binding protein (RRM superfamily) Lalb_Chr19 + View
Lotus japonicus Lj5g0020239 K13126 - polyadenylate-binding protein (PABPC) chr5 - View
Lonicera japonica Lj4A705G45 GWHAAZE00000004 - View
Lonicera japonica Lj7C386T18 GWHAAZE00000007 - View
Lactuca sativa Lsat_1_v5_gn_1_5080 Lsat_1_v8_lg_1 - View
Malus domestica MD10G1038000 poly(A) binding protein 3 Chr10 - View
Malus domestica MD05G1035900 poly(A) binding protein 3 Chr05 - View
Manihot esculenta Manes.02G185200 Chromosome02 - View
Medicago truncatula Medtr1g097440 polyadenylate-binding protein chr1 + View
Nelumbo nucifera Nn5g28870 chr5 + View
Olea europaea Oeu046070.1 chr14 - View
Petunia axillaris Peaxi162Scf00360g00097 Polyadenylate-binding protein 5 Peaxi162Scf00360 - View
Prunus persica Prupe.8G043700 K13126 - polyadenylate-binding protein (PABPC) Pp08 + View
Papaver somniferum PSO210G4416 NC_039359.1 + View
Papaver somniferum PSO675G6601 NC_039358.1 - View
Papaver somniferum PSO541G3509 NC_039363.1 - View
Papaver somniferum PSO170G0575 NC_039360.1 + View
Populus trichocarpa Potri.005G198500 K13126 - polyadenylate-binding protein (PABPC) Chr05 - View
Populus trichocarpa Potri.002G062700 K13126 - polyadenylate-binding protein (PABPC) Chr02 + View
Phaseolus vulgaris Phvul.007G084800 Chr07 - View
Quercus lobata QL02p036527 CM012294 + View
Rosa chinensis RcHm_v2.0_Chr6g0273861 RcHm_v2.0_Chr6 + View
Rhododendron simsii Rhsim11G0088700 chr11 - View
Rhododendron simsii Rhsim06G0093100 chr06 - View
Salix brachista Sabra02G0050600 GWHAAZH00000002 + View
Sechium edule Sed0008493 LG03 - View
Sechium edule Sed0001395 LG11 - View
Solanum lycopersicum Solyc04g072043.1 Polyadenylate-binding protein (AHRD V3.3 *** A0A2G3CN64_CAPCH) SL4.0ch04 - View
Schrenkiella parvula Sp5g26790 K13126 - polyadenylate-binding protein (PABPC) ch5-6 - View
Schrenkiella parvula Sp1g20270 K13126 - polyadenylate-binding protein (PABPC) ch1-1 + View
Solanum pennellii Sopen04g028140 Encodes a Class I polyA-binding protein. Expressed in floral organs. Binds polyA sepharose in vitro. | poly(A)-binding protein 5 (PAB5) | CONTAINS InterPro DOMAIN/s: Polyadenylate-binding protein/Hyperplastic disc protein , RNA recognition motif, RNP-1 , Polyadenylate binding protein, human types 1, 2, 3, 4 , Nucleotide-binding, alpha-beta plait , RNA recognition, domain 1 | BEST Arabidopsis thaliana protein match is: poly(A) binding protein 3 ., 31 kDa ribonucleoprotein, chloroplast precursor - Nicotiana sylvestris (Wood tobacco) Spenn-ch04 + View
Solanum tuberosum PGSC0003DMG400025074 Polyadenylate-binding protein ST4.03ch04 + View
Selenicereus undatus Hund17500 Scaffold_33675 - View
Trochodendron aralioides TAR376G0697 group14 + View
Trochodendron aralioides TAR628G0293 group5 + View
Theobroma cacao Thecc.08G163400 Polyadenylate-binding protein 3-binding protein 3 Chromosome_8 - View
Tarenaya hassleriana THA.LOC104800094 polyadenylate-binding protein 3 isoform X1 NW_010969032.1 - View
Trifolium pratense TPR.G17029 Tp57577_TGAC_v2_LG1 - View
Vaccinium macrocarpon vmacro01504 Similar to PAB5: Polyadenylate-binding protein 5 (Arabidopsis thaliana OX%3D3702) chr1_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo0720G0626 CM024071.1 + View
Vigna mungo VMungo0464G0774 CM024077.1 - View
Vitis vinifera GSVIVG01013699001 chr18_random + View