Gene: AT1G34140

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G34140
  • Transcript Identifier AT1G34140.1
  • Gene Type Coding gene
  • Location Chr1 : 12433356-12434735 : negative

Gene Family Information

  • ID HOM05D000428
  • #Genes/#Species 1201/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G34140.1
  • symbol PAB1
  • uniprot F4HT49

Descriptions

  • Description poly(A) binding protein 1
  • Computational description poly(A) binding protein 1 (PAB1); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition, domain 1 (InterPro:IPR003954); BEST Arabidopsis thaliana protein match is: poly(A)-binding protein 5 (TAIR:AT1G71770.2); Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006412
ISS
Gene Ontologytranslation
GO:0006413
ISS
Gene Ontologytranslational initiation
GO:0006417
IEA
GOA Databaseregulation of translation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003743
ISS
Gene Ontologytranslation initiation factor activity
GO:0003723
IBA
IEA
GOA DatabaseRNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003730
IBA
GOA DatabasemRNA 3'-UTR binding
GO:0008266
IBA
GOA Databasepoly(U) RNA binding
GO:0008143
IBA
GOA Databasepoly(A) binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005634
IBA
IEA
GOA Databasenucleus
GO:0005829
IBA
GOA Databasecytosol
GO:1990904
IBA
GOA Databaseribonucleoprotein complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035979 RNA-binding domain superfamily
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR000504 RNA recognition motif domain
IPR003954 RNA recognition motif domain, eukaryote
Mapman id Description
17.4.2.5 Protein biosynthesis.translation initiation.mRNA loading.mRNA poly-A-tail binding factor (PABP)