Gene: Sed0001395
General Information
Structural Information
- Species Sechium edule
- Gene Identifier Sed0001395
- Transcript Identifier Sed0001395.1
- Gene Type Coding gene
- Location LG11 : 29853241-29856796 : negative
Gene Family Information
- ID HOM05D000428
- #Genes/#Species 1201/100
- Phylogenetic origin
- ID ORTHO05D000582
- #Genes/#Species 762/99
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sed0001395.1
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0060211 | ISO | PLAZA Integrative Orthology | regulation of nuclear-transcribed mRNA poly(A) tail shortening | AT1G22760 |
| GO:0006397 | ISO | PLAZA Integrative Orthology | mRNA processing | AT1G22760 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0003723 | IEA | InterPro | RNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:1990904 | IEA | InterPro | ribonucleoprotein complex |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR035979 | RNA-binding domain superfamily |
| IPR002004 | Polyadenylate-binding protein/Hyperplastic disc protein |
| IPR006515 | Polyadenylate binding protein, human types 1, 2, 3, 4 |
| IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| IPR002343 | Paraneoplastic encephalomyelitis antigen |
| IPR000504 | RNA recognition motif domain |
| IPR036053 | PABC (PABP) domain |
| IPR003954 | RNA recognition motif domain, eukaryote |
| Mapman id | Description |
|---|---|
| 17.4.2.5 | Protein biosynthesis.translation initiation.mRNA loading.mRNA poly-A-tail binding factor (PABP) |