Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0022007 PREDICTED: RNA and export factor-binding protein 2-like [Cucumis sativus] Chr1 + View
CSS0023231 PREDICTED: THO complex subunit 4A [Prunus mume] Chr4 + View
CSS0042919 hypothetical protein EUGRSUZ_B02389 [Eucalyptus grandis] Chr4 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG1G22270 LG-1 + View
Acer truncatum Atru.chr3.3837 chr3 + View
Acer truncatum Atru.chr8.1942 chr8 - View
Actinidia chinensis Actinidia23956 Lachesis_group9 + View
Actinidia chinensis Actinidia02965 Lachesis_group22 - View
Actinidia chinensis Actinidia33857 Lachesis_group15 - View
Actinidia chinensis Actinidia26446 Lachesis_group17 + View
Arabidopsis lyrata AL6G11790 scaffold_6 - View
Amaranthus hybridus Ah.08g219080 THO complex subunit 4A (ALYREF homolog 1) (AtALY1) AmaHy_arrow1_Scaffold_8 + View
Aquilegia oxysepala Aqoxy4G02984 CHR04 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.CV46RI K12881 - THO complex subunit 4 (THOC4, ALY) arahy.Tifrunner.gnm1.Arahy.18 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.4ZTL4S K12881 - THO complex subunit 4 (THOC4, ALY) arahy.Tifrunner.gnm1.Arahy.17 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.GS5YLT K12881 - THO complex subunit 4 (THOC4, ALY) arahy.Tifrunner.gnm1.Arahy.08 - View
Arabidopsis thaliana AT5G02530 RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G59950.1)%3B Has 12422 Blast hits to 9446 proteins in 764 species: Archae - 2%3B Bacteria - 1351%3B Metazoa - 5150%3B Fungi - 2013%3B Plants - 2049%3B Viruses - 53%3B Other Eukaryotes - 1804 (source: NCBI BLink). Chr5 - View
Brassica carinata BcaC04g19651 ChrC04 + View
Brassica carinata BcaB08g36207 ChrB08 - View
Brassica napus C02p11980 C02 - View
Brassica napus A02p06690 A02 - View
Brassica napus C09p52460 C09 + View
Brassica napus A10p17160 A10 + View
Brassica oleracea BolC9t58113H C9 + View
Brassica rapa BraA10t43798Z A10 + View
Beta vulgaris EL10Ac7g15977 K12881 - THO complex subunit 4 (THOC4, ALY) Chr7_EL10_PGA_scaffold5 + View
Cannabis sativa CANSAT54G2283 NC_044375.1 + View
Cicer arietinum L. Ca_19185_v3 Ca_LG6_v3 - View
Corylus avellana Haze_17037 Similar to ALY2: THO complex subunit 4B (Arabidopsis thaliana OX%3D3702) 11 + View
Corylus avellana Haze_24048 Similar to ALY1: THO complex subunit 4A (Arabidopsis thaliana OX%3D3702) 6 + View
Coffea canephora Cc02_g08170 Putative RNA-binding (RRM/RBD/RNP motifs) family protein chr2 - View
Coffea canephora Cc01_g12490 RNA-binding (RRM/RBD/RNP motifs) family protein chr1 + View
Citrus clementina Ciclev10029160m.g scaffold_8 + View
Citrus clementina Ciclev10032532m.g scaffold_4 - View
Citrus clementina Ciclev10012530m.g scaffold_6 - View
Ceratophyllum demersum CDE02G2164 1 - View
Ceratophyllum demersum CDE08G1666 6 + View
Ceratophyllum demersum CDE07G1326 5 + View
Carpinus fangiana Cfa011463 Cfa04 + View
Carpinus fangiana Cfa001506 Cfa01 - View
Cardamine hirsuta CARHR273580 THO complex subunit Chr8 + View
Cardamine hirsuta CARHR210830 THO complex subunit Chr6 + View
Carya illinoinensis CiPaw.01G284200 K12881 - THO complex subunit 4 (THOC4, ALY) Chr01 + View
Carya illinoinensis CiPaw.14G071000 PF13865 - C-terminal duplication domain of Friend of PRMT1 (FoP_duplication) Chr14 - View
Carya illinoinensis CiPaw.13G097800 K12881 - THO complex subunit 4 (THOC4, ALY) Chr13 - View
Carya illinoinensis CiPaw.02G182200 K12881 - THO complex subunit 4 (THOC4, ALY) Chr02 + View
Citrullus lanatus ClCG02G020360 THO complex subunit CG_Chr02 - View
Citrullus lanatus ClCG03G001960 THO complex subunit CG_Chr03 - View
Cucumis melo MELO3C013685.2 THO complex subunit 4A chr11 + View
Cucumis melo MELO3C020710.2 THO complex subunit 4A chr12 - View
Corchorus olitorius COL.COLO4_14838 hypothetical protein AWUE01015464.1 - View
Corchorus olitorius COL.COLO4_18470 hypothetical protein AWUE01016465.1 + View
Corchorus olitorius COL.COLO4_14969 hypothetical protein AWUE01015535.1 - View
Carica papaya Cpa.g.sc190.14 supercontig_190 - View
Chenopodium quinoa AUR62001823 Protein of unknown function C_Quinoa_Scaffold_2716 - View
Chenopodium quinoa AUR62009610 ALY1: THO complex subunit 4A C_Quinoa_Scaffold_2493 - View
Capsella rubella Carub.0006s0133 PTHR19965//PTHR19965:SF29 - RNA AND EXPORT FACTOR BINDING PROTEIN // SUBFAMILY NOT NAMED scaffold_6 - View
Capsella rubella Carub.0008s2050 PTHR19965//PTHR19965:SF29 - RNA AND EXPORT FACTOR BINDING PROTEIN // SUBFAMILY NOT NAMED scaffold_8 - View
Cucumis sativus L. CsaV3_6G017140 THO complex subunit 4A chr6 - View
Daucus carota DCAR_014840 hypothetical protein DCARv2_Chr4 - View
Daucus carota DCAR_027660 hypothetical protein DCARv2_Chr8 + View
Davidia involucrata Dinv32869 GWHABJS00000010 + View
Davidia involucrata Dinv37195 GWHABJS00000021 + View
Davidia involucrata Dinv35625 GWHABJS00000015 - View
Davidia involucrata Dinv31434 GWHABJS00000004 + View
Davidia involucrata Dinv25989 GWHABJS00000009 - View
Durio zibethinus Duzib106G1891 NW_019168492.1 + View
Durio zibethinus Duzib168G0023 NW_019168159.1 - View
Durio zibethinus Duzib150G1022 NW_019167882.1 + View
Durio zibethinus Duzib128G1580 NW_019168481.1 + View
Erigeron canadensis ECA238G3179 Conyza_canadensis_scaffold:6 - View
Erigeron canadensis ECA236G4565 Conyza_canadensis_scaffold:3 - View
Eucalyptus grandis Eucgr.B02389 Chr02 - View
Erythranthe guttata Migut.J00347 scaffold_10 - View
Erythranthe guttata Migut.N02668 scaffold_14 - View
Eutrema salsugineum Thhalv10014286m.g PTHR19965//PTHR19965:SF29 - RNA AND EXPORT FACTOR BINDING PROTEIN // SUBFAMILY NOT NAMED scaffold_2 - View
Eutrema salsugineum Thhalv10014531m.g PTHR19965//PTHR19965:SF29 - RNA AND EXPORT FACTOR BINDING PROTEIN // SUBFAMILY NOT NAMED scaffold_2 - View
Fragaria x ananassa FAN25G3302 K12881 - THO complex subunit 4 (THOC4, ALY) Fvb3-1 + View
Fragaria x ananassa FAN21G3131 K12881 - THO complex subunit 4 (THOC4, ALY) Fvb3-2 + View
Fragaria x ananassa FAN16G3619 K12881 - THO complex subunit 4 (THOC4, ALY) Fvb3-3 + View
Fragaria x ananassa FAN11G0606 K12881 - THO complex subunit 4 (THOC4, ALY) Fvb3-4 + View
Fragaria vesca FvH4_3g35460 PTHR19965//PTHR19965:SF29 - RNA AND EXPORT FACTOR BINDING PROTEIN // SUBFAMILY NOT NAMED Fvb3 + View
Gossypium hirsutum Gohir.A03G039600 K12881 - THO complex subunit 4 (THOC4, ALY) A03 + View
Gossypium hirsutum Gohir.D03G128500 K12881 - THO complex subunit 4 (THOC4, ALY) D03 - View
Gossypium hirsutum Gohir.A13G228200 K12881 - THO complex subunit 4 (THOC4, ALY) A13 - View
Gossypium hirsutum Gohir.D13G233800 K12881 - THO complex subunit 4 (THOC4, ALY) D13 - View
Gossypium hirsutum Gohir.D07G100600 K12881 - THO complex subunit 4 (THOC4, ALY) D07 + View
Gossypium hirsutum Gohir.A07G096200 K12881 - THO complex subunit 4 (THOC4, ALY) A07 + View
Glycine max Glyma.12G064900 PTHR19965//PTHR19965:SF29 - RNA AND EXPORT FACTOR BINDING PROTEIN // SUBFAMILY NOT NAMED Gm12 - View
Glycine max Glyma.11G141500 PTHR19965//PTHR19965:SF29 - RNA AND EXPORT FACTOR BINDING PROTEIN // SUBFAMILY NOT NAMED Gm11 - View
Glycine max Glyma.13G334200 PTHR19965//PTHR19965:SF29 - RNA AND EXPORT FACTOR BINDING PROTEIN // SUBFAMILY NOT NAMED Gm13 + View
Gossypium raimondii Gorai.003G135200 Chr03 - View
Gossypium raimondii Gorai.013G264600 Chr13 - View
Gossypium raimondii Gorai.001G108500 Chr01 + View
Helianthus annuus HanXRQChr06g0175781 Probable RNA-binding (RRM/RBD/RNP motifs) family protein HanXRQChr06 - View
Helianthus annuus HanXRQChr14g0458301 Putative nucleotide-binding alpha-beta plait domain HanXRQChr14 - View
Hydrangea macrophylla Hma1.2p1_0624F.1_g191370 Hma1.2p1_0624F.1 + View
Hydrangea macrophylla Hma1.2p1_0035F.1_g022155 Hma1.2p1_0035F.1 + View
Lupinus albus Lalb_Chr14g0375041 PTHR19965//PTHR19965:SF29 - RNA AND EXPORT FACTOR BINDING PROTEIN // SUBFAMILY NOT NAMED Lalb_Chr14 + View
Lupinus albus Lalb_Chr24g0394231 PTHR19965//PTHR19965:SF29 - RNA AND EXPORT FACTOR BINDING PROTEIN // SUBFAMILY NOT NAMED Lalb_Chr24 - View
Lotus japonicus Lj3g0013964 K12881 - THO complex subunit 4 (THOC4, ALY) chr3 - View
Lotus japonicus Lj1g0017338 PTHR19965//PTHR19965:SF31 - RNA AND EXPORT FACTOR BINDING PROTEIN // SUBFAMILY NOT NAMED chr1 - View
Lotus japonicus Lj3g0023044 PTHR19965//PTHR19965:SF29 - RNA AND EXPORT FACTOR BINDING PROTEIN // SUBFAMILY NOT NAMED chr3 - View
Lonicera japonica Lj2A1057G41 GWHAAZE00000002 + View
Lonicera japonica Lj1C934G7 GWHAAZE00000001 + View
Lonicera japonica Lj1A157T43 GWHAAZE00000001 - View
Lonicera japonica Lj3A970T56 GWHAAZE00000003 + View
Lactuca sativa Lsat_1_v5_gn_8_77900 K12881 - THO complex subunit 4 (THOC4, ALY) Lsat_1_v8_lg_8 - View
Lactuca sativa Lsat_1_v5_gn_2_117740 Lsat_1_v8_lg_2 + View
Magnolia biondii MBI05_g10363_MAGBIO AED:0.07 Chr05 + View
Magnolia biondii MBI14_g18542_MAGBIO AED:0.04 Chr14 + View
Malus domestica MD07G1194100 RNA-binding (RRM/RBD/RNP motifs) family protein Chr07 + View
Malus domestica MD11G1143800 RNA-binding (RRM/RBD/RNP motifs) family protein Chr11 - View
Malus domestica MD03G1097200 RNA-binding (RRM/RBD/RNP motifs) family protein Chr03 - View
Manihot esculenta Manes.04G032200 Chromosome04 + View
Manihot esculenta Manes.07G113400 Chromosome07 + View
Manihot esculenta Manes.11G133200 Chromosome11 - View
Medicago truncatula Medtr4g063557 RNA and export factor-binding protein chr4 + View
Nelumbo nucifera Nn2g10421 chr2 - View
Nelumbo nucifera Nn2g12935 chr2 - View
Nicotiana tabacum Nitab4.5_0003782g0070 RNA recognition motif domain, Friend of PRMT1 duplication, Nucleotide-binding, alpha-beta plait Nitab4.5_0003782 - View
Nicotiana tabacum Nitab4.5_0000610g0070 RNA recognition motif domain, Nucleotide-binding, alpha-beta plait Nitab4.5_0000610 - View
Nicotiana tabacum Nitab4.5_0000349g0140 RNA recognition motif domain, Glycoside hydrolase, superfamily, Glycoside hydrolase, family 17, Glycoside hydrolase, catalytic domain, Nucleotide-binding, alpha-beta plait Nitab4.5_0000349 + View
Oryza sativa ssp. japonica Os03g0278300 Similar to THO complex subunit 4. Transcriptional coactivator-like protein. Similar to ALY protein. chr03 - View
Petunia axillaris Peaxi162Scf00406g00131 RNA-binding (RRM/RBD/RNP motifs) family protein Peaxi162Scf00406 - View
Punica granatum PGR102G3154 NC_045129.1 + View
Punica granatum PGR142G4421 NC_045128.1 + View
Prunus persica Prupe.6G081700 Pp06 - View
Pisum sativum Psat7g218080 RNA recognition motif. (a.k.a. RRM + RBD + or RNP domain) chr7LG7 - View
Papaver somniferum PSO339G0026 NC_039366.1 - View
Papaver somniferum PSO339G4215 NC_039366.1 + View
Papaver somniferum PSO648G0123 NW_020648748.1 + View
Populus trichocarpa Potri.001G236900 PTHR19965//PTHR19965:SF29 - RNA AND EXPORT FACTOR BINDING PROTEIN // SUBFAMILY NOT NAMED Chr01 + View
Populus trichocarpa Potri.008G052601 PTHR19965//PTHR19965:SF31 - RNA AND EXPORT FACTOR BINDING PROTEIN // SUBFAMILY NOT NAMED Chr08 + View
Populus trichocarpa Potri.010G208000 PTHR19965//PTHR19965:SF31 - RNA AND EXPORT FACTOR BINDING PROTEIN // SUBFAMILY NOT NAMED Chr10 - View
Phaseolus vulgaris Phvul.008G013600 PTHR19965:SF33 - THO COMPLEX SUBUNIT 4D Chr08 - View
Phaseolus vulgaris Phvul.L003743 PTHR19965//PTHR19965:SF29 - RNA AND EXPORT FACTOR BINDING PROTEIN // SUBFAMILY NOT NAMED scaffold_15 + View
Phaseolus vulgaris Phvul.011G066000 PTHR19965//PTHR19965:SF29 - RNA AND EXPORT FACTOR BINDING PROTEIN // SUBFAMILY NOT NAMED Chr11 - View
Quercus lobata QL01p032964 1 - View
Quercus lobata QL08p059030 8 + View
Rosa chinensis RcHm_v2.0_Chr5g0063611 RcHm_v2.0_Chr5 + View
Rosa chinensis RcHm_v2.0_Chr1g0366271 RcHm_v2.0_Chr1 + View
Rhododendron simsii Rhsim05G0189500 chr05 + View
Rhododendron simsii Rhsim01G0225400 chr01 + View
Striga asiatica SGA_v2.0_scaffold126G33807 scaffold126 - View
Salvia bowleyana SalBow2G1248 GWHASIU00000007 - View
Salix brachista Sabra09G0019600 GWHAAZH00000009 + View
Salix brachista Sabra10G0160800 GWHAAZH00000010 - View
Salix brachista Sabra16G0142800 GWHAAZH00000016 + View
Simmondsia chinensis Sc12g0001620 GWHAASQ00000012 - View
Sechium edule Sed0008125 LG01 - View
Solanum lycopersicum Solyc11g073280.2 THO complex subunit 4A-like (AHRD V3.3 *** A0A2I4FWJ6_9ROSI) SL4.0ch11 + View
Solanum lycopersicum Solyc10g086400.2 THO complex subunit 4B (AHRD V3.3 *** A0A2G3BF44_CAPCH) SL4.0ch10 + View
Schrenkiella parvula Sp6g21630 PTHR19965//PTHR19965:SF29 - RNA AND EXPORT FACTOR BINDING PROTEIN // SUBFAMILY NOT NAMED ch6-6 + View
Solanum pennellii Sopen10g035780 RNA-binding (RRM/RBD/RNP motifs) family protein | FUNCTIONS IN: nucleotide binding, nucleic acid binding | INVOLVED IN: biological_process unknown | LOCATED IN: chloroplast | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein . Spenn-ch10 + View
Selenicereus undatus Hund18928 Scaffold_33675 - View
Selenicereus undatus Hund04989 Scaffold_19641 - View
Trochodendron aralioides TAR636G0228 group1 + View
Trochodendron aralioides TAR633G2207 group2 - View
Trochodendron aralioides TAR369G0298 group18 - View
Theobroma cacao Thecc.09G325800 RNA-binding family protein Chromosome_9 - View
Theobroma cacao Thecc.10G046800 RNA-binding family protein Chromosome_10 + View
Theobroma cacao Thecc.05G042800 RNA-binding family protein Chromosome_5 - View
Tarenaya hassleriana THA.LOC104816286 THO complex subunit 4B NW_010965775.1 - View
Tarenaya hassleriana THA.LOC104827008 THO complex subunit 4B-like NW_010967707.1 + View
Tripterygium wilfordii TWI75G0996 NC_052253.1 - View
Tripterygium wilfordii TWI31G0647 NC_052233.1 - View
Tripterygium wilfordii TWI38G0221 NC_052252.1 + View
Vaccinium macrocarpon vmacro20131 Similar to ALY1: THO complex subunit 4A (Arabidopsis thaliana OX%3D3702) chr5_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro07158 Similar to ALY1: THO complex subunit 4A (Arabidopsis thaliana OX%3D3702) chr2_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro14532 Similar to ALY2: THO complex subunit 4B (Arabidopsis thaliana OX%3D3702) chr7_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo1080G1188 CM024079.1 - View
Vigna mungo VMungo1383G2214 CM024070.1 - View
Vanilla planifolia HPP92_014314 RNA-binding family protein *** CM028155.1 - View
Vitis vinifera GSVIVG01016588001 chr13 + View
Vitis vinifera GSVIVG01025009001 chr6 + View
Zea mays Zm00001eb012600 Zm00001e001243 THO complex subunit 4 THO complex subunit 4B 1 - View
Zea mays Zm00001eb397560 Zm00001e038471 THO complex subunit 4B 9 + View