Gene: AT5G02530

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G02530
  • Transcript Identifier AT5G02530.1
  • Gene Type Coding gene
  • Location Chr5 : 564332-565776 : negative

Gene Family Information

  • ID HOM05D001365
  • #Genes/#Species 458/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G02530.1
  • uniprot Q8L719

Descriptions

  • Description RNA-binding (RRM/RBD/RNP motifs) family protein
  • Computational description RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G59950.1); Has 12422 Blast hits to 9446 proteins in 764 species: Archae - 2; Bacteria - 1351; Metazoa - 5150; Fungi - 2013; Plants - 2049; Viruses - 53; Other Eukaryotes - 1804 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006406
IBA
Gene OntologymRNA export from nucleus1
GO:0051028
IEA
GOA DatabasemRNA transport

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding2
GO:0003729
IDA, HDA
IBA
Gene OntologymRNA binding1 3 4
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005654
IEA
GOA Databasenucleoplasm
GO:0005654
IDA
Gene Ontologynucleoplasm5
GO:0005886
HDA
Gene Ontologyplasma membrane6
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IBA
Gene Ontologynucleus1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000504 RNA recognition motif domain
IPR035979 RNA-binding domain superfamily
IPR025715 Chromatin target of PRMT1 protein, C-terminal
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Mapman id Description
16.10.1.2.1 RNA processing.messenger ribonucleoparticle (mRNP) export.TREX/THO mRNP trafficking complex.mRNA export adaptor activities.mRNA-binding adaptor (ALY/Tho4)