Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0010960 unnamed protein product [Coffea canephora] Contig864 + View
CSS0008219 unnamed protein product [Coffea canephora] Chr1 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG7G13770 LG-7 + View
Acer truncatum Atru.chr3.218 chr3 - View
Actinidia chinensis Actinidia32816 Lachesis_group8 + View
Actinidia chinensis Actinidia36449 Lachesis_group4 - View
Actinidia chinensis Actinidia12004 Lachesis_group11 - View
Arabidopsis lyrata AL4G12980 scaffold_4 - View
Arabidopsis lyrata AL7G13370 scaffold_7 - View
Arabidopsis lyrata AL8G43990 scaffold_8 - View
Amaranthus hybridus Ah.03g146250 AmaHy_arrow1_Scaffold_3 + View
Arabidopsis thaliana AT5G67340 ARM repeat superfamily protein ARM repeat superfamily protein%3B FUNCTIONS IN: ubiquitin-protein ligase activity%2C binding%3B INVOLVED IN: protein ubiquitination%3B LOCATED IN: endomembrane system%2C ubiquitin ligase complex%3B EXPRESSED IN: 11 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613)%2C Armadillo-like helical (InterPro:IPR011989)%2C Armadillo (InterPro:IPR000225)%2C Armadillo-type fold (InterPro:IPR016024)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein with ARM repeat domain (TAIR:AT2G23140.2)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink). Chr5 + View
Arabidopsis thaliana AT2G23140 RING/U-box superfamily protein with ARM repeat domain-containing protein RING/U-box superfamily protein with ARM repeat domain%3B FUNCTIONS IN: ubiquitin-protein ligase activity%2C binding%3B INVOLVED IN: protein ubiquitination%3B LOCATED IN: ubiquitin ligase complex%3B EXPRESSED IN: male gametophyte%2C cultured cell%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%3B CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613)%2C Armadillo-like helical (InterPro:IPR011989)%2C Armadillo (InterPro:IPR000225)%2C Armadillo-type fold (InterPro:IPR016024)%3B BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G67340.1)%3B Has 11466 Blast hits to 5570 proteins in 449 species: Archae - 8%3B Bacteria - 346%3B Metazoa - 2626%3B Fungi - 852%3B Plants - 4850%3B Viruses - 10%3B Other Eukaryotes - 2774 (source: NCBI BLink). Chr2 - View
Brassica carinata BcaB04g20065 ChrB04 - View
Brassica carinata BcaB06g27882 ChrB06 - View
Brassica carinata BcaC04g23208 ChrC04 + View
Brassica napus C09p11110 C09 - View
Brassica napus A07p16550 A07 - View
Brassica napus C04p52540 C04 - View
Brassica oleracea BolC9t54000H C9 - View
Brassica oleracea BolC7t42953H C7 - View
Brassica rapa BraA07t29379Z A07 - View
Cannabis sativa CANSAT01G1330 NC_044373.1 - View
Corylus avellana Haze_15329 Similar to PUB4: U-box domain-containing protein 4 (Arabidopsis thaliana OX%3D3702) 11 - View
Coffea canephora Cc07_g06640 U-box domain-containing protein 4 chr7 + View
Citrus clementina Ciclev10024899m.g scaffold_7 + View
Carpinus fangiana Cfa004085 Cfa01 + View
Cardamine hirsuta CARHR280270 U-box domain-containing protein 2 Chr8 - View
Carya illinoinensis CiPaw.01G008600 PTHR23315//PTHR23315:SF117 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // SUBFAMILY NOT NAMED Chr01 - View
Citrullus lanatus ClCG01G017200 U-box domain-containing protein 4 CG_Chr01 + View
Cucumis melo MELO3C007598.2 RING-type E3 ubiquitin transferase chr08 + View
Carica papaya Cpa.g.sc6.66 supercontig_6 - View
Chenopodium quinoa AUR62038269 PUB4: U-box domain-containing protein 4 C_Quinoa_Scaffold_3452 + View
Chenopodium quinoa AUR62003956 PUB4: U-box domain-containing protein 4 C_Quinoa_Scaffold_2370 + View
Capsella rubella Carub.0008s2715 PTHR23315//PTHR23315:SF119 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // U-BOX DOMAIN-CONTAINING PROTEIN 3 scaffold_8 - View
Capsella rubella Carub.0004s0235 PTHR23315//PTHR23315:SF117 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // SUBFAMILY NOT NAMED scaffold_4 - View
Cucumis sativus L. CsaV3_6G043740 RING-type E3 ubiquitin transferase chr6 + View
Daucus carota DCAR_025771 hypothetical protein DCARv2_Chr7 + View
Davidia involucrata Dinv26889 GWHABJS00000014 + View
Davidia involucrata Dinv30055 GWHABJS00000507 + View
Durio zibethinus Duzib187G1688 NW_019167860.1 - View
Durio zibethinus Duzib264G0410 NW_019167960.1 - View
Erigeron canadensis ECA238G3399 Conyza_canadensis_scaffold:6 - View
Eucalyptus grandis Eucgr.I00736 Chr09 - View
Fragaria x ananassa FAN26G1673 PTHR23315//PTHR23315:SF117 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // SUBFAMILY NOT NAMED Fvb1-2 - View
Fragaria x ananassa FAN19G0899 PTHR23315//PTHR23315:SF117 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // SUBFAMILY NOT NAMED Fvb1-4 + View
Fragaria x ananassa FAN28G2089 PTHR23315//PTHR23315:SF117 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // SUBFAMILY NOT NAMED Fvb1-1 - View
Fragaria vesca FvH4_1g17050 PTHR23315//PTHR23315:SF117 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // SUBFAMILY NOT NAMED Fvb1 + View
Gossypium hirsutum Gohir.D11G205000 PTHR23315//PTHR23315:SF117 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // SUBFAMILY NOT NAMED D11 + View
Gossypium hirsutum Gohir.A11G218700 PTHR23315//PTHR23315:SF117 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // SUBFAMILY NOT NAMED A11 - View
Gossypium hirsutum Gohir.A02G153900 PTHR23315//PTHR23315:SF117 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // SUBFAMILY NOT NAMED A02 - View
Gossypium hirsutum Gohir.A12G075033 PTHR23315//PTHR23315:SF117 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // SUBFAMILY NOT NAMED A12 + View
Gossypium hirsutum Gohir.D03G025100 PTHR23315//PTHR23315:SF117 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // SUBFAMILY NOT NAMED D03 - View
Gossypium raimondii Gorai.007G219900 Chr07 + View
Gossypium raimondii Gorai.003G026700 Chr03 - View
Gossypium raimondii Gorai.008G079700 Chr08 + View
Helianthus annuus HanXRQChr14g0449581 Putative zinc finger, RING/FYVE/PHD-type; Armadillo-type fold HanXRQChr14 + View
Hydrangea macrophylla Hma1.2p1_0239F.1_g099870 Hma1.2p1_0239F.1 - View
Lonicera japonica Lj7C86G4 GWHAAZE00000007 + View
Lactuca sativa Lsat_1_v5_gn_4_162241 PTHR23315//PTHR23315:SF117 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // SUBFAMILY NOT NAMED Lsat_1_v8_lg_4 - View
Lactuca sativa Lsat_1_v5_gn_2_84561 Lsat_1_v8_lg_2 - View
Malus domestica MD15G1291600 RING/U-box superfamily protein with ARM repeat domain Chr15 + View
Malus domestica MD02G1180700 RING/U-box superfamily protein with ARM repeat domain Chr02 + View
Manihot esculenta Manes.13G115500 Chromosome13 - View
Punica granatum PGR004G0267 NC_045131.1 + View
Prunus persica Prupe.6G225500 K08332 - vacuolar protein 8 (VAC8) Pp06 - View
Populus trichocarpa Potri.005G144700 PTHR23315//PTHR23315:SF117 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // SUBFAMILY NOT NAMED Chr05 + View
Populus trichocarpa Potri.007G051000 PTHR23315//PTHR23315:SF117 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // SUBFAMILY NOT NAMED Chr07 + View
Rosa chinensis RcHm_v2.0_Chr2g0107211 RcHm_v2.0_Chr2 + View
Rhododendron simsii Rhsim08G0096400 chr08 - View
Rhododendron simsii Rhsim10G0104900 chr10 - View
Salix brachista Sabra07G0045100 GWHAAZH00000007 + View
Simmondsia chinensis Sc03g0001950 GWHAASQ00000003 + View
Sechium edule Sed0018612 LG14 + View
Schrenkiella parvula Sp2g29320 PTHR23315:SF119 - U-BOX DOMAIN-CONTAINING PROTEIN 3 ch2-4 - View
Schrenkiella parvula Sp4g02200 PTHR23315//PTHR23315:SF117 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // SUBFAMILY NOT NAMED ch4-1 - View
Theobroma cacao Thecc.01G066800 RING/U-box superfamily protein with ARM repeat domain Chromosome_1 + View
Tarenaya hassleriana THA.LOC104807616 U-box domain-containing protein 4 NW_010963495.1 + View
Tripterygium wilfordii TWI53G0727 NC_052244.1 + View
Tripterygium wilfordii TWI09G0363 NC_052245.1 + View
Vaccinium macrocarpon vmacro17982 Similar to PUB4: U-box domain-containing protein 4 (Arabidopsis thaliana OX%3D3702) chr3_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro05227 Similar to PUB4: U-box domain-containing protein 4 (Arabidopsis thaliana OX%3D3702) chr12_Vaccinium_macrocarpon_Stevens_v1 - View
Vitis vinifera GSVIVG01000169001 chr7 - View