Gene: AT2G23140

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G23140
  • Transcript Identifier AT2G23140.1
  • Gene Type Coding gene
  • Location Chr2 : 9845696-9849105 : negative

Gene Family Information

  • ID HOM05D001760
  • #Genes/#Species 369/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G23140.1
  • symbol PUB4
  • Alias AtPUB4
  • full_name plant U-box 4
  • uniprot O22193

Descriptions

  • Description RING/U-box superfamily protein with ARM repeat domain-containing protein
  • Computational description RING/U-box superfamily protein with ARM repeat domain; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G67340.1); Has 11466 Blast hits to 5570 proteins in 449 species: Archae - 8; Bacteria - 346; Metazoa - 2626; Fungi - 852; Plants - 4850; Viruses - 10; Other Eukaryotes - 2774 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0034614
IGI
Gene Ontologycellular response to reactive oxygen species1
GO:0016567
IMP
IEA
Gene Ontologyprotein ubiquitination1
GO:0016567
IEA
InterProprotein ubiquitination
GO:1904821
IGI
Gene Ontologychloroplast disassembly1
GO:0048364
IGI
Gene Ontologyroot development2
GO:0048658
IMP
Gene Ontologyanther wall tapetum development3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0004842
IEA
Gene Ontologyubiquitin-protein transferase activity
GO:0004842
IEA
InterProubiquitin-protein transferase activity
GO:0016740
IEA
GOA Databasetransferase activity
GO:0061630
IDA, IMP
Gene Ontologyubiquitin protein ligase activity1 3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM, IBA
Gene Ontologynucleus4
GO:0005737
IDA
IBA
Gene Ontologycytoplasm3 4

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003613 U box domain
IPR000225 Armadillo
IPR016024 Armadillo-type fold
IPR011989 Armadillo-like helical
IPR013083 Zinc finger, RING/FYVE/PHD-type
Mapman id Description
19.2.2.1.4.2.1 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.U-Box E3 ligase activities.group-II ligase