Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0030645 brca1 associated ring domain, putative [Ricinus communis] Contig1181 + View
CSS0041116 PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Vitis vinifera] Chr1 - View
CSS0007363 hypothetical protein VITISV_019802 [Vitis vinifera] Chr9 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr5.1792 chr5 + View
Actinidia chinensis Actinidia37539 Lachesis_group13 + View
Actinidia chinensis Actinidia30138 Lachesis_group24 + View
Actinidia chinensis Actinidia09526 Lachesis_group15 + View
Avicennia marina MSTRG.21471 ScioBoG_26769_HRSCAF_26899 - View
Avicennia marina MSTRG.24660 ScioBoG_4088_HRSCAF_4107 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.GZCK2M K10683 - BRCA1-associated RING domain protein 1 [EC:6.3.2.19] (BARD1) arahy.Tifrunner.gnm1.Arahy.06 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.0MSU5M K10683 - BRCA1-associated RING domain protein 1 [EC:6.3.2.19] (BARD1) arahy.Tifrunner.gnm1.Arahy.16 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.JZIK2D PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) arahy.Tifrunner.gnm1.Arahy.02 + View
Amborella trichopoda ATR0736G050 AmTr_v1.0_scaffold00067 + View
Beta vulgaris EL10Ac7g17663 K10683 - BRCA1-associated RING domain protein 1 [EC:6.3.2.19] (BARD1) Chr7_EL10_PGA_scaffold5 - View
Cannabis sativa CANSAT01G2073 The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon NC_044373.1 - View
Cicer arietinum L. Ca_08695_v3 Ca_LG3_v3 - View
Cicer arietinum L. Ca_08731_v3 Ca_LG3_v3 + View
Corylus avellana Haze_24678 Similar to BARD1: BRCA1-associated RING domain protein 1 (Arabidopsis thaliana OX%3D3702) 8 + View
Coffea canephora Cc01_g17980 Putative Protein BREAST CANCER SUSCEPTIBILITY 1 homolog chr1 - View
Citrus clementina Ciclev10019112m.g scaffold_3 - View
Citrus clementina Ciclev10007205m.g scaffold_9 + View
Carpinus fangiana Cfa002466 Cfa01 + View
Cardamine hirsuta CARHR265620 Pentatricopeptide repeat-containing protein Chr8 + View
Carya illinoinensis CiPaw.03G268500 K10683 - BRCA1-associated RING domain protein 1 [EC:6.3.2.19] (BARD1) Chr03 + View
Cucumis melo MELO3C012852.2 Protein BREAST CANCER SUSCEPTIBILITY 1-like protein chr04 - View
Carica papaya Cpa.g.sc165.43 supercontig_165 + View
Daucus carota DCAR_030771 hypothetical protein DCARv2_Chr9 + View
Daucus carota DCAR_018508 hypothetical protein DCARv2_Chr5 + View
Davidia involucrata Dinv16381 GWHABJS00000007 + View
Durio zibethinus Duzib138G0763 NW_019167893.1 + View
Durio zibethinus Duzib133G0831 NW_019167938.1 + View
Eucalyptus grandis Eucgr.K01493 Chr11 - View
Erythranthe guttata Migut.D00462 scaffold_4 + View
Fragaria x ananassa FAN20G1076 PF13771//PF13920 - PHD-like zinc-binding domain (zf-HC5HC2H) // Zinc finger, C3HC4 type (RING finger) (zf-C3HC4_3) Fvb2-3 + View
Fragaria x ananassa FAN15G1101 K10683 - BRCA1-associated RING domain protein 1 [EC:6.3.2.19] (BARD1) Fvb2-4 - View
Fragaria vesca FvH4_2g20860 K10683 - BRCA1-associated RING domain protein 1 [EC:6.3.2.19] (BARD1) Fvb2 - View
Gossypium hirsutum Gohir.A11G133000 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) A11 + View
Gossypium hirsutum Gohir.D11G139100 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) D11 + View
Glycine max Glyma.03G165600 K10683 - BRCA1-associated RING domain protein 1 [EC:6.3.2.19] (BARD1) Gm03 + View
Glycine max Glyma.19G166900 PTHR13763 - BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 Gm19 + View
Gossypium raimondii Gorai.011G046700 Chr11 - View
Helianthus annuus HanXRQChr15g0467401 Putative tetratricopeptide-like helical domain HanXRQChr15 - View
Helianthus annuus HanXRQChr10g0280791 Probable tetratricopeptide repeat (TPR)-like superfamily protein HanXRQChr10 - View
Lupinus albus Lalb_Chr06g0170641 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Lalb_Chr06 + View
Lupinus albus Lalb_Chr01g0019561 K10683 - BRCA1-associated RING domain protein 1 [EC:6.3.2.19] (BARD1) Lalb_Chr01 - View
Lotus japonicus Lj5g0016821 PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) chr5 + View
Lotus japonicus Lj1g0010012 K10683 - BRCA1-associated RING domain protein 1 [EC:6.3.2.19] (BARD1) chr1 - View
Lonicera japonica Lj2A1144G94 GWHAAZE00000002 - View
Magnolia biondii MBI10_g19238_MAGBIO AED:0.30 Chr10 + View
Magnolia biondii MBI07_g23674_MAGBIO AED:0.00 Chr07 + View
Malus domestica MD10G1178800 breast cancer associated RING 1 Chr10 - View
Malus domestica MD05G1192200 breast cancer associated RING 1 Chr05 - View
Manihot esculenta Manes.13G037400 Chromosome13 - View
Manihot esculenta Manes.13G065600 Chromosome13 + View
Manihot esculenta Manes.12G035400 Chromosome12 + View
Medicago truncatula Medtr7g098170 breast cancer susceptibility protein, putative chr7 + View
Nelumbo nucifera Nn3g19729 chr3 - View
Nicotiana tabacum Nitab4.5_0000326g0240 BRCT domain, Zinc finger, RING-type, conserved site, Zinc finger, RING-type, Breast cancer type 1 susceptibility protein (BRCA1), Zinc finger, RING/FYVE/PHD-type Nitab4.5_0000326 + View
Nicotiana tabacum Nitab4.5_0003295g0150 Breast cancer type 1 susceptibility protein (BRCA1), Zinc finger, PHD-type, BRCT domain Nitab4.5_0003295 + View
Olea europaea Oeu039662.2 chr1 + View
Oryza sativa ssp. japonica Os04g0512400 Similar to Midline 1 protein (Tripartite motif protein 18). chr04 - View
Petunia axillaris Peaxi162Scf00415g00517 breast cancer associated RING 1 Peaxi162Scf00415 + View
Punica granatum PGR044G2513 NC_045134.1 + View
Prunus persica Prupe.8G218500 K10683 - BRCA1-associated RING domain protein 1 [EC:6.3.2.19] (BARD1) Pp08 - View
Populus trichocarpa Potri.014G191200 PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Chr14 + View
Populus trichocarpa Potri.002G258766 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Chr02 + View
Phaseolus vulgaris Phvul.001G163300 Chr01 + View
Quercus lobata QL09p040907 9 + View
Rosa chinensis RcHm_v2.0_Chr6g0287261 RcHm_v2.0_Chr6 - View
Rhododendron simsii Rhsim13G0038900 chr13 + View
Rhododendron simsii Rhsim01G0261400 chr01 - View
Rhododendron simsii Rhsim05G0172100 chr05 + View
Striga asiatica SGA_v2.0_scaffold138G35197 scaffold138 - View
Sechium edule Sed0014923 LG01 - View
Solanum lycopersicum Solyc06g008210.4 Protein BREAST CANCER SUSCEPTIBILITY 1-like protein (AHRD V3.3 *** A0A1J3HZN2_NOCCA) SL4.0ch06 - View
Schrenkiella parvula Sp1g02860 K10683 - BRCA1-associated RING domain protein 1 [EC:6.3.2.19] (BARD1) ch1-1 + View
Solanum pennellii Sopen06g003070 Encodes a protein containing two tandem BRCA1 C-Terminal (BRCT) domains, which function in phosphorylation-dependent proteinñprotein interactions.Loss of function mutations cause defects in meristem organization due to failure to repress WUS. BARD1 binds to WUS promoter and over expression of BARD reduces the extent of WUS expression. | breast cancer associated RING 1 (BARD1) | FUNCTIONS IN: transcription coactivator activity, DNA binding | INVOLVED IN: DNA repair, regulation of meristem structural organization, leaf development | LOCATED IN: intracellular | EXPRESSED IN: 21 plant structures | EXPRESSED DURING: 12 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site , Zinc finger, RING-type , Zinc finger, PHD-type , BRCT | BEST Arabidopsis thaliana protein match is: breast cancer susceptibility1 Spenn-ch06 - View
Solanum tuberosum PGSC0003DMG400014714 ATBARD1/BARD1 ST4.03ch06 + View
Selenicereus undatus Hund09594 Scaffold_10417 - View
Selenicereus undatus Hund05474 Scaffold_19641 - View
Trochodendron aralioides TAR362G1132 group17 + View
Trochodendron aralioides TAR633G0994 group2 - View
Theobroma cacao Thecc.01G253100 Breast cancer associated RING 1 Chromosome_1 - View
Theobroma cacao Thecc.06G146400 Pentatricopeptide repeat protein 78 Chromosome_6 + View
Tripterygium wilfordii TWI75G1432 NC_052253.1 + View
Vaccinium macrocarpon vmacro14758 Similar to PCMP-E76: Pentatricopeptide repeat-containing protein At2g13600 (Arabidopsis thaliana OX%3D3702) chr7_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro14807 Similar to BARD1: BRCA1-associated RING domain protein 1 (Arabidopsis thaliana OX%3D3702) chr7_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo0720G1372 CM024071.1 + View
Vigna mungo VMungo1080G1484 CM024079.1 - View
Vanilla planifolia HPP92_008544 Protein BREAST CANCER SUSCEPTIBILITY 1-like protein *** CM028153.1 - View
Vitis vinifera GSVIVG01028388001 chr7 + View
Zea mays Zm00001eb077450 Zm00001e007590 ATBRCA1 2 - View