Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0020939 PREDICTED: pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Nicotiana tomentosiformis] Chr14 + View
CSS0013338 PREDICTED: pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Nicotiana tomentosiformis] Contig679 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG9G6320 LG-9 + View
Acer truncatum Atru.chr6.1755 chr6 + View
Actinidia chinensis Actinidia09222 Lachesis_group13 + View
Arabidopsis lyrata AL8G11770 scaffold_8 + View
Amaranthus hybridus Ah.12g054630 Pentatricopeptide repeat-containing protein At5g46580, chloroplastic AmaHy_arrow1_Scaffold_12 - View
Aquilegia oxysepala Aqoxy3G02461 CHR03 + View
Arabidopsis thaliana AT5G46580 pentatricopeptide (PPR) repeat-containing protein pentatricopeptide (PPR) repeat-containing protein%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%2C Smr protein/MutS2 C-terminal (InterPro:IPR002625)%3B BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G16390.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr5 - View
Amborella trichopoda ATR0049G008 AmTr_v1.0_scaffold00149 - View
Brassica carinata BcaC06g34370 ChrC06 + View
Brassica napus C07p29780 C07 - View
Brassica napus A06p45860 A06 + View
Brassica oleracea BolC7t43530H C7 - View
Brassica rapa BraA06t27453Z A06 + View
Beta vulgaris EL10Ac5g12167 PF13041 - PPR repeat family (PPR_2) Chr5_EL10_PGA_scaffold2 - View
Cannabis sativa CANSAT21G1089 NC_044374.1 + View
Cicer arietinum L. Ca_22060_v3 Ca_LG7_v3 + View
Corylus avellana Haze_08268 Similar to At5g46580: Pentatricopeptide repeat-containing protein At5g46580, chloroplastic (Arabidopsis thaliana OX%3D3702) 4 + View
Coffea canephora Cc08_g02420 Pentatricopeptide repeat-containing protein At5g46580, chloroplastic chr8 - View
Citrus clementina Ciclev10033739m.g scaffold_4 + View
Ceratophyllum demersum CDE11G0761 9 + View
Carpinus fangiana Cfa012410 Cfa05 - View
Carya illinoinensis CiPaw.11G091000 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Chr11 - View
Citrullus lanatus ClCG10G001810 Pentatricopeptide repeat-containing protein CG_Chr10 + View
Cucumis melo MELO3C013863.2 Pentatricopeptide repeat-containing protein chr06 + View
Corchorus olitorius COL.COLO4_17074 hypothetical protein AWUE01016286.1 + View
Chenopodium quinoa AUR62007250 At5g46580: Pentatricopeptide repeat-containing protein At5g46580, chloroplastic C_Quinoa_Scaffold_1971 + View
Chenopodium quinoa AUR62018748 At5g46580: Pentatricopeptide repeat-containing protein At5g46580, chloroplastic C_Quinoa_Scaffold_1817 - View
Capsella rubella Carub.0008s0133 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) scaffold_8 + View
Cucumis sativus L. CsaV3_3G001900 Pentatricopeptide repeat-containing protein chr3 + View
Davidia involucrata Dinv28931 GWHABJS00000003 - View
Durio zibethinus Duzib205G1470 NW_019168381.1 + View
Eucalyptus grandis Eucgr.E00302 Chr05 + View
Eutrema salsugineum Thhalv10000815m.g PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) scaffold_20 - View
Fragaria x ananassa FAN18G0399 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Fvb5-1 - View
Fragaria x ananassa FAN13G1043 PF13041 - PPR repeat family (PPR_2) Fvb5-2 - View
Fragaria x ananassa FAN04G0996 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Fvb5-4 - View
Fragaria x ananassa FAN08G2986 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Fvb5-3 + View
Fragaria vesca FvH4_5g21640 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Fvb5 - View
Gossypium hirsutum Gohir.D12G212300 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) D12 + View
Gossypium hirsutum Gohir.A12G209600 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) A12 + View
Gossypium hirsutum Gohir.D11G028500 PF13041 - PPR repeat family (PPR_2) D11 - View
Gossypium hirsutum Gohir.A11G030000 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) A11 - View
Glycine max Glyma.17G153900 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Gm17 - View
Glycine max Glyma.05G113300 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Gm05 + View
Gossypium raimondii Gorai.007G031200 Chr07 - View
Gossypium raimondii Gorai.008G227900 Chr08 + View
Hydrangea macrophylla Hma1.2p1_0585F.1_g183590 Hma1.2p1_0585F.1 - View
Lupinus albus Lalb_Chr05g0220581 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Lalb_Chr05 + View
Lotus japonicus Lj4g0012916 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) chr4 - View
Magnolia biondii MBI04_g22956_MAGBIO AED:0.00 Chr04 - View
Malus domestica MD16G1277300 pentatricopeptide (PPR) repeat-containing protein Chr16 + View
Malus domestica MD06G1031400 pentatricopeptide (PPR) repeat-containing protein Chr06 - View
Manihot esculenta Manes.17G013500 Chromosome17 + View
Medicago truncatula Medtr4g098660 pentatricopeptide (PPR) repeat protein chr4 - View
Nelumbo nucifera Nn1g00578 chr1 + View
Punica granatum PGR042G3232 NC_045130.1 + View
Prunus persica Prupe.5G040700 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Pp05 + View
Pisum sativum Psat4g078640 PPR repeat family chr4LG4 + View
Papaver somniferum PSO063G7100 NC_039364.1 - View
Papaver somniferum PSO782G2150 NC_039365.1 + View
Populus trichocarpa Potri.003G089600 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Chr03 - View
Phaseolus vulgaris Phvul.003G229500 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Chr03 - View
Quercus lobata QL12p006241 12 + View
Rosa chinensis RcHm_v2.0_Chr7g0209101 RcHm_v2.0_Chr7 - View
Rhododendron simsii Rhsim07G0124600 chr07 + View
Salix brachista Sabra03G0059400 GWHAAZH00000003 - View
Simmondsia chinensis Sc07g0008770 GWHAASQ00000007 + View
Solanum lycopersicum Solyc08g077120.2 Pentatricopeptide repeat-containing protein, chloroplastic (AHRD V3.3 *-* A0A2G2XLM4_CAPBA) SL4.0ch08 + View
Schrenkiella parvula Sp2g11410 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) ch2-4 - View
Solanum pennellii Sopen08g025700 pentatricopeptide (PPR) repeat-containing protein | INVOLVED IN: biological_process unknown | LOCATED IN: chloroplast | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat , Smr protein/MutS2 C-terminal | BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein Spenn-ch08 + View
Solanum tuberosum PGSC0003DMG400035484 Pentatricopeptide repeat-containing protein ST4.03ch08 + View
Trochodendron aralioides TAR636G3549 group1 - View
Theobroma cacao Thecc.03G231100 Pentatricopeptide (PPR) repeat-containing protein Chromosome_3 + View
Trifolium pratense TPR.G28660 Tp57577_TGAC_v2_scaf_813 - View
Tripterygium wilfordii TWI60G1708 NC_052246.1 + View
Vigna mungo VMungo0251G3088 CM024069.1 - View