Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0036451 PREDICTED: ATP-dependent zinc metalloprotease FTSH 6, chloroplastic-like [Vitis vinifera] Chr1 + View
CSS0027162 PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic isoform X1 [Vitis vinifera] Chr2 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG11G14190 LG-11 + View
Acer truncatum Atru.chr8.191 chr8 - View
Actinidia chinensis Actinidia19023 Lachesis_group9 + View
Actinidia chinensis Actinidia38764 Lachesis_group4 + View
Actinidia chinensis Actinidia38782 Contig02207_ERROPOS181165+ + View
Actinidia chinensis Actinidia17550 Lachesis_group21 - View
Actinidia chinensis Actinidia37613 Lachesis_group13 + View
Arabidopsis lyrata AL6G26170 scaffold_6 - View
Arabidopsis lyrata AL7G50630 scaffold_7 + View
Avicennia marina MSTRG.23915 ScioBoG_3895_HRSCAF_3912 + View
Avicennia marina MSTRG.15522 ScioBoG_19538_HRSCAF_19626 - View
Amaranthus hybridus Ah.02g113560 Pentatricopeptide repeat-containing protein At3g47530 AmaHy_arrow1_Scaffold_2 + View
Aquilegia oxysepala Aqoxy3G03428 CHR03 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.Q4IUW2 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) arahy.Tifrunner.gnm1.Arahy.04 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.6EI7CH PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) arahy.Tifrunner.gnm1.Arahy.14 + View
Arabidopsis thaliana AT5G15300 Pentatricopeptide repeat (PPR) superfamily protein Pentatricopeptide repeat (PPR) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G29230.1)%3B Has 37071 Blast hits to 13818 proteins in 252 species: Archae - 0%3B Bacteria - 21%3B Metazoa - 136%3B Fungi - 146%3B Plants - 36104%3B Viruses - 0%3B Other Eukaryotes - 664 (source: NCBI BLink). Chr5 - View
Arabidopsis thaliana AT5G39680 Pentatricopeptide repeat (PPR) superfamily protein EMBRYO DEFECTIVE 2744 (EMB2744)%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G27610.1)%3B Has 37711 Blast hits to 13427 proteins in 206 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 37%3B Fungi - 23%3B Plants - 37282%3B Viruses - 0%3B Other Eukaryotes - 369 (source: NCBI BLink). Chr5 - View
Brassica carinata BcaB08g34378 ChrB08 - View
Brassica carinata BcaB08g36906 ChrB08 + View
Brassica napus C09p61750 C09 + View
Brassica napus C06p43200 C06 + View
Brassica napus A10p23520 A10 + View
Brassica oleracea BolC9t59013H C9 + View
Brassica rapa BraA10t44418Z A10 + View
Capsicum annuum CAN.G206.166 PGAv.1.6.scaffold206 - View
Cicer arietinum L. Ca_06770_v3 Ca_LG3_v3 - View
Cicer arietinum L. Ca_21807_v3 Ca_LG7_v3 - View
Citrus clementina Ciclev10011507m.g scaffold_6 - View
Citrus clementina Ciclev10031011m.g scaffold_4 + View
Carpinus fangiana Cfa008975 Cfa03 - View
Carpinus fangiana Cfa007557 Cfa03 - View
Cardamine hirsuta CARHR025040 Pentatricopeptide repeat-containing protein Chr1 + View
Cardamine hirsuta CARHR262610 Pentatricopeptide repeat protein Chr8 + View
Cardamine hirsuta CARHR197950 Pentatricopeptide repeat-containing protein Chr6 + View
Carya illinoinensis CiPaw.05G132700 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Chr05 - View
Carya illinoinensis CiPaw.06G085700 PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Chr06 + View
Citrullus lanatus ClCG10G015070 Pentatricopeptide repeat-containing family protein CG_Chr10 - View
Citrullus lanatus ClCG09G018090 Pentatricopeptide repeat-containing family protein CG_Chr09 + View
Citrullus lanatus ClCG11G000960 Pentatricopeptide repeat-containing family protein CG_Chr11 + View
Cucumis melo MELO3C001979.2 pentatricopeptide repeat-containing protein At1g74630 chr12 - View
Cucumis melo MELO3C029755.2 pentatricopeptide repeat-containing protein At4g21065-like chr02 - View
Chenopodium quinoa AUR62005793 RNS1: Ribonuclease 1 C_Quinoa_Scaffold_1214 + View
Capsella rubella Carub.0007s3610 PF13041//PF14432 - PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) scaffold_7 - View
Capsella rubella Carub.0006s1349 PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) scaffold_6 - View
Cucumis sativus L. CsaV3_5G032730 Ribonuclease T2-like protein chr5 + View
Cucumis sativus L. CsaV3_1G005460 Pentatricopeptide repeat chr1 + View
Cucumis sativus L. CsaV3_5G038060 ribonuclease 1-like isoform X2 chr5 + View
Davidia involucrata Dinv19971 GWHABJS00000006 - View
Davidia involucrata Dinv33763 GWHABJS00000014 - View
Davidia involucrata Dinv06535 GWHABJS00000012 - View
Durio zibethinus Duzib264G0626 NW_019167960.1 + View
Durio zibethinus Duzib268G1309 NW_019168270.1 - View
Durio zibethinus Duzib068G0420 NW_019167838.1 - View
Erigeron canadensis ECA232G1140 Conyza_canadensis_scaffold:2 + View
Erigeron canadensis ECA246G3639 Conyza_canadensis_scaffold:8 + View
Erythranthe guttata Migut.D01808 scaffold_4 + View
Eutrema salsugineum Thhalv10027662m.g PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) scaffold_14 + View
Eutrema salsugineum Thhalv10015396m.g PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) scaffold_2 - View
Fragaria x ananassa FAN14G4899 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Fvb6-1 + View
Fragaria x ananassa FAN09G0241 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Fvb6-2 + View
Fragaria x ananassa FAN05G3740 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Fvb6-3 - View
Fragaria x ananassa FAN04G1772 PF14432 - DYW family of nucleic acid deaminases (DYW_deaminase) Fvb5-4 - View
Fragaria vesca FvH4_5g14900 PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Fvb5 - View
Gossypium hirsutum Gohir.D11G074400 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) D11 - View
Gossypium hirsutum Gohir.A05G366600 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) A05 - View
Gossypium hirsutum Gohir.A11G070500 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) A11 - View
Gossypium hirsutum Gohir.A07G205000 PF00533//PF13771//PF13920 - BRCA1 C Terminus (BRCT) domain (BRCT) // PHD-like zinc-binding domain (zf-HC5HC2H) // Zinc finger, C3HC4 type (RING finger) (zf-C3HC4_3) A07 - View
Gossypium hirsutum Gohir.A03G066700 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) A03 + View
Glycine max Glyma.18G117601 PF01535//PF12854//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Gm18 + View
Glycine max Glyma.18G259800 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Gm18 - View
Glycine max Glyma.19G025700 PF01535//PF13812//PF14432 - PPR repeat (PPR) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Gm19 - View
Glycine max Glyma.09G235800 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Gm09 + View
Glycine max Glyma.06G196000 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Gm06 - View
Gossypium raimondii Gorai.007G079800 Chr07 - View
Gossypium raimondii Gorai.003G097100 Chr03 + View
Gossypium raimondii Gorai.001G238400 Chr01 - View
Gossypium raimondii Gorai.005G143300 Chr05 + View
Helianthus annuus HanXRQChr09g0265241 Probable pentatricopeptide repeat (PPR) superfamily protein HanXRQChr09 + View
Helianthus annuus HanXRQChr16g0524661 Putative pentatricopeptide repeat HanXRQChr16 + View
Lotus japonicus Lj2g0003212 PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) chr2 + View
Lotus japonicus Lj4g0025344 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) chr4 - View
Lonicera japonica Lj3P1037T26 GWHAAZE00000003 - View
Lonicera japonica Lj9P463T9 GWHAAZE00000009 + View
Lonicera japonica Lj4P110T41 GWHAAZE00000004 + View
Lonicera japonica Lj7A387T74 GWHAAZE00000007 + View
Lactuca sativa Lsat_1_v5_gn_3_99020 PF13041//PF14432 - PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Lsat_1_v8_lg_3 - View
Lactuca sativa Lsat_1_v5_gn_8_52620 PTHR11240:SF19 - F7A19.32 PROTEIN-RELATED Lsat_1_v8_lg_8 - View
Malus domestica MD09G1051700 Pentatricopeptide repeat (PPR) superfamily protein Chr09 - View
Manihot esculenta Manes.14G078400 Chromosome14 + View
Manihot esculenta Manes.06G090600 Chromosome06 + View
Medicago truncatula Medtr4g108660 PPR containing plant-like protein chr4 + View
Medicago truncatula Medtr6g012850 pentatricopeptide (PPR) repeat protein chr6 - View
Medicago truncatula Medtr5g042450 PPR containing plant-like protein chr5 - View
Medicago truncatula Medtr7g011030 pentatricopeptide (PPR) repeat protein chr7 - View
Nelumbo nucifera Nn3g17323 chr3 - View
Nicotiana tabacum Nitab4.5_0000391g0400 Pentatricopeptide repeat, Ribonuclease T2-like, Tetratricopeptide-like helical Nitab4.5_0000391 + View
Olea europaea Oeu048112.5 chr12 - View
Olea europaea Oeu062102.1 chr10 + View
Oryza sativa ssp. japonica Os01g0814300 Pentatricopeptide repeat domain containing protein. chr01 + View
Petunia axillaris Peaxi162Scf00129g00001 Pentatricopeptide repeat-containing protein Peaxi162Scf00129 + View
Punica granatum PGR083G2078 NC_045133.1 + View
Punica granatum PGR119G0008 NC_045132.1 - View
Populus trichocarpa Potri.004G124400 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Chr04 + View
Populus trichocarpa Potri.017G083900 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Chr17 - View
Phaseolus vulgaris Phvul.002G092700 PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Chr02 + View
Phaseolus vulgaris Phvul.004G029400 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Chr04 - View
Phaseolus vulgaris Phvul.003G188600 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Chr03 - View
Phaseolus vulgaris Phvul.008G037800 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Chr08 - View
Phaseolus vulgaris Phvul.009G185632 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Chr09 + View
Quercus lobata QL03p068759 3 - View
Quercus lobata QL02p082330 CM012294 - View
Quercus lobata QL03p063618 3 - View
Rosa chinensis RcHm_v2.0_Chr2g0168261 RcHm_v2.0_Chr2 + View
Rhododendron simsii Rhsim12G0154400 chr12 - View
Rhododendron simsii Rhsim12G0134500 chr12 + View
Salvia bowleyana SalBow2G2128 GWHASIU00000007 - View
Salix brachista Sabra17G0074100 GWHAAZH00000017 - View
Simmondsia chinensis Sc04g0002600 GWHAASQ00000004 - View
Sechium edule Sed0027655 LG11 - View
Sechium edule Sed0003784 LG04 + View
Sechium edule Sed0014076 LG08 - View
Sechium edule Sed0017935 LG03 + View
Sechium edule Sed0020784 LG08 - View
Solanum lycopersicum Solyc02g088170.2 Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A2G3ACG6_CAPAN) SL4.0ch02 - View
Solanum lycopersicum Solyc05g013200.1 Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A2G2YDB1_CAPAN) SL4.0ch05 + View
Schrenkiella parvula Sp7g02330 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) ch7-1 + View
Schrenkiella parvula Sp1g12560 3.1.27.1 - Ribonuclease T(2) / Ribonuclease T2 ch1-1 - View
Solanum pennellii Sopen05g003600 Tetratricopeptide repeat (TPR)-like superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein Spenn-ch05 + View
Solanum pennellii Sopen05g007940 Encodes a chloroplast RNA editing factor. | ORGANELLE TRANSCRIPT PROCESSING 85 (OTP85) | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein Spenn-ch05 + View
Solanum pennellii Sopen02g032860 Pentatricopeptide repeat (PPR) superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein Spenn-ch02 - View
Solanum tuberosum PGSC0003DMG400005565 Pentatricopeptide repeat-containing protein ST4.03ch05 - View
Trochodendron aralioides TAR622G1146 group8 - View
Trochodendron aralioides TAR374G0578 group12 - View
Trochodendron aralioides TAR629G1856 group0 + View
Tarenaya hassleriana THA.LOC104821017 pentatricopeptide repeat-containing protein At5g15340%2C mitochondrial NW_010966372.1 + View
Tarenaya hassleriana THA.LOC104805474 pentatricopeptide repeat-containing protein At5g39680 NW_010961290.1 - View
Tarenaya hassleriana THA.LOC104801784 pentatricopeptide repeat-containing protein At2g02750 NW_010970030.1 - View
Tarenaya hassleriana THA.LOC104822902 putative pentatricopeptide repeat-containing protein At1g69350%2C mitochondrial NW_010966822.1 + View
Trifolium pratense TPR.G15906 Tp57577_TGAC_v2_LG5 - View
Trifolium pratense TPR.G39178 Tp57577_TGAC_v2_LG3 + View
Tripterygium wilfordii TWI60G1660 NC_052246.1 - View
Tripterygium wilfordii TWI34G1463 NC_052235.1 + View
Tripterygium wilfordii TWI15G0918 NC_052247.1 + View
Vaccinium macrocarpon vmacro18184 Protein of unknown function chr3_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo0464G1187 CM024077.1 - View