Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0000791 PREDICTED: probable rhamnose biosynthetic enzyme 1 [Nelumbo nucifera] Contig440 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG7G1840 LG-7 - View
Aethionema arabicum Aa31LG4G2390 LG-4 - View
Acer truncatum Atru.chr2.1961 chr2 + View
Actinidia chinensis Actinidia39415 Lachesis_group5 - View
Arabidopsis lyrata AL2G38970 scaffold_2 + View
Arabidopsis lyrata AL3G27100 scaffold_3 + View
Avicennia marina MSTRG.14986 ScioBoG_19538_HRSCAF_19626 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.PFN41B K12450 - UDP-glucose 4,6-dehydratase (RHM) arahy.Tifrunner.gnm1.Arahy.07 + View
Arabidopsis thaliana AT1G78570 rhamnose biosynthesis 1 Encodes a UDP-L-Rhamnose synthase involved in the biosynthesis of rhamnose%2C a major monosaccharide component of pectin. Catalyzes the conversion of UDP-D-Glc to UDP-L-Rha. The dehydrogenase domain of RHM1 was shown to catalyze the conversion of UDP-D-Glc to the reaction intermediate UDP-4-keto-6-deoxy-D-Glc using recombinant protein assay but the activity of the full-length protein was not determined as it could not be expressed in %3Ci%3EE. coli%3C/i%3E. rhamnose biosynthesis 1 (RHM1)%3B CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509)%2C NAD(P)-binding domain (InterPro:IPR016040)%2C dTDP-4-dehydrorhamnose reductase (InterPro:IPR005913)%3B BEST Arabidopsis thaliana protein match is: rhamnose biosynthesis 3 (TAIR:AT3G14790.1)%3B Has 54880 Blast hits to 54585 proteins in 3085 species: Archae - 917%3B Bacteria - 31981%3B Metazoa - 1168%3B Fungi - 566%3B Plants - 1527%3B Viruses - 106%3B Other Eukaryotes - 18615 (source: NCBI BLink). Chr1 + View
Arabidopsis thaliana AT1G53500 NAD-dependent epimerase/dehydratase family protein encodes a putative NDP-L-rhamnose synthase%2C an enzyme required for the synthesis of the pectin rhamnogalacturonan I%2C the major component of Arabidopsis mucilage. Gene is involved in seed coat mucilage cell development. Mutant analyses suggest that MUM4 is required for complete mucilage synthesis%2C cytoplasmic rearrangement and seed coat development. MUCILAGE-MODIFIED 4 (MUM4)%3B FUNCTIONS IN: UDP-4-keto-rhamnose-4-keto-reductase activity%2C UDP-4-keto-6-deoxy-glucose-3%2C5-epimerase activity%2C catalytic activity%2C UDP-glucose 4%2C6-dehydratase activity%2C UDP-L-rhamnose synthase activity%3B INVOLVED IN: seed coat development%2C UDP-rhamnose biosynthetic process%2C mucilage biosynthetic process%2C metabolic process%3B LOCATED IN: soluble fraction%3B EXPRESSED IN: 28 plant structures%3B EXPRESSED DURING: 17 growth stages%3B CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509)%2C NAD(P)-binding domain (InterPro:IPR016040)%2C dTDP-4-dehydrorhamnose reductase (InterPro:IPR005913)%3B BEST Arabidopsis thaliana protein match is: rhamnose biosynthesis 3 (TAIR:AT3G14790.1)%3B Has 53909 Blast hits to 53717 proteins in 3029 species: Archae - 941%3B Bacteria - 31079%3B Metazoa - 1146%3B Fungi - 539%3B Plants - 1500%3B Viruses - 107%3B Other Eukaryotes - 18597 (source: NCBI BLink). Chr1 - View
Arabidopsis thaliana AT3G14790 rhamnose biosynthesis 3 rhamnose biosynthesis 3 (RHM3)%3B CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509)%2C NAD(P)-binding domain (InterPro:IPR016040)%2C dTDP-4-dehydrorhamnose reductase (InterPro:IPR005913)%3B BEST Arabidopsis thaliana protein match is: NAD-dependent epimerase/dehydratase family protein (TAIR:AT1G53500.1)%3B Has 53605 Blast hits to 53390 proteins in 3033 species: Archae - 947%3B Bacteria - 30692%3B Metazoa - 1095%3B Fungi - 569%3B Plants - 1514%3B Viruses - 102%3B Other Eukaryotes - 18686 (source: NCBI BLink). Chr3 + View
Brassica carinata BcaC05g29036 ChrC05 - View
Brassica carinata BcaB06g25356 ChrB06 - View
Brassica carinata BcaC08g47432 ChrC08 - View
Brassica carinata BcaC08g43536 ChrC08 - View
Brassica napus A06p00980 A06 + View
Brassica napus A06p12900 A06 - View
Brassica napus A07p43820 A07 + View
Brassica napus C05p52470 C05 - View
Brassica napus C05p15330 C05 - View
Brassica napus A01p39040 A01 - View
Brassica napus C06p52470 C06 + View
Brassica oleracea BolC5t33931H C5 - View
Brassica oleracea BolC5t30239H C5 - View
Brassica oleracea BolC6t40266H C6 + View
Brassica rapa BraA01t03951Z A01 - View
Brassica rapa BraA06t23326Z A06 + View
Brassica rapa BraA05t22284Z A05 - View
Brassica rapa BraA07t31891Z A07 + View
Brassica rapa BraA09t41437Z A09 + View
Brassica rapa BraA06t24450Z A06 - View
Beta vulgaris EL10Ac4g08424 4.2.1.76 - UDP-glucose 4,6-dehydratase Chr4_EL10_PGA_scaffold1 - View
Capsicum annuum CAN.G375.53 PGAv.1.6.scaffold375 - View
Cannabis sativa CANSAT56G0890 NC_044371.1 + View
Cicer arietinum L. Ca_03919_v3 Ca_LG1_v3 + View
Corylus avellana Haze_09253 Similar to RHM1: Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 (Arabidopsis thaliana OX%3D3702) 4 - View
Coffea canephora Cc05_g09270 Probable rhamnose biosynthetic enzyme 1 chr5 - View
Coffea canephora Cc05_g10660 Probable rhamnose biosynthetic enzyme 1 chr5 + View
Citrus clementina Ciclev10019182m.g scaffold_3 + View
Carpinus fangiana Cfa019522 Cfa08 - View
Cardamine hirsuta CARHR017500 Dtdp-glucose 4,6-dehydratase, putative Chr1 - View
Cardamine hirsuta CARHR072060 Dtdp-glucose 4,6-dehydratase, putative Chr2 + View
Cardamine hirsuta CARHR043730 Dtdp-glucose 4,6-dehydratase, putative Chr1 - View
Carya illinoinensis CiPaw.11G156400 K12450 - UDP-glucose 4,6-dehydratase (RHM) Chr11 - View
Citrullus lanatus ClCG07G010150 Dtdp-glucose 4,6-dehydratase, putative CG_Chr07 - View
Cucumis melo MELO3C016119.2 trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 chr07 - View
Chenopodium quinoa AUR62013952 RHM1: Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 C_Quinoa_Scaffold_3035 + View
Chenopodium quinoa AUR62019659 RHM1: Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 C_Quinoa_Scaffold_2127 - View
Capsella rubella Carub.0003s1446 K12450 - UDP-glucose 4,6-dehydratase (RHM) scaffold_3 + View
Capsella rubella Carub.0001s4268 K12450 - UDP-glucose 4,6-dehydratase (RHM) scaffold_1 - View
Capsella rubella Carub.0002s2542 4.2.1.76 - UDP-glucose 4,6-dehydratase scaffold_2 + View
Cucumis sativus L. CsaV3_4G008170 UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose 4-keto-reductase chr4 + View
Daucus carota DCAR_013782 hypothetical protein DCARv2_Chr4 + View
Davidia involucrata Dinv13359 GWHABJS00000001 + View
Davidia involucrata Dinv26704 GWHABJS00000013 - View
Durio zibethinus Duzib268G0150 NW_019168270.1 - View
Durio zibethinus Duzib213G0076 The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon NW_019167993.1 - View
Erigeron canadensis ECA236G1076 Conyza_canadensis_scaffold:3 + View
Erigeron canadensis ECA240G2561 Conyza_canadensis_scaffold:5 + View
Eucalyptus grandis Eucgr.F01369 Chr06 - View
Eucalyptus grandis Eucgr.F03231 Chr06 + View
Erythranthe guttata Migut.H02027 scaffold_8 - View
Erythranthe guttata Migut.M00690 scaffold_13 + View
Eutrema salsugineum Thhalv10020227m.g K12450 - UDP-glucose 4,6-dehydratase (RHM) scaffold_13 - View
Eutrema salsugineum Thhalv10011290m.g K12450 - UDP-glucose 4,6-dehydratase (RHM) scaffold_7 + View
Eutrema salsugineum Thhalv10018232m.g K12450 - UDP-glucose 4,6-dehydratase (RHM) scaffold_9 - View
Fragaria x ananassa FAN11G2275 K12450 - UDP-glucose 4,6-dehydratase (RHM) Fvb3-4 - View
Fragaria x ananassa FAN16G3609 K12450 - UDP-glucose 4,6-dehydratase (RHM) Fvb3-3 + View
Fragaria vesca FvH4_3g17640 K12450 - UDP-glucose 4,6-dehydratase (RHM) Fvb3 + View
Gossypium hirsutum Gohir.A01G047050 PTHR10366:SF385 - RHAMNOSE BIOSYNTHETIC ENZYME 1-RELATED A01 + View
Gossypium hirsutum Gohir.D01G037750 PTHR10366:SF385 - RHAMNOSE BIOSYNTHETIC ENZYME 1-RELATED D01 + View
Gossypium hirsutum Gohir.D05G338200 K12450 - UDP-glucose 4,6-dehydratase (RHM) D05 + View
Glycine max Glyma.12G234300 K12450 - UDP-glucose 4,6-dehydratase (RHM) Gm12 - View
Glycine max Glyma.15G210300 K12450 - UDP-glucose 4,6-dehydratase (RHM) Gm15 - View
Glycine max Glyma.13G264500 K12450 - UDP-glucose 4,6-dehydratase (RHM) Gm13 + View
Gossypium raimondii Gorai.002G046100 Chr02 + View
Gossypium raimondii Gorai.009G362500 Chr09 + View
Helianthus annuus HanXRQChr03g0072801 Probable rhamnose biosynthesis 1 HanXRQChr03 + View
Helianthus annuus HanXRQChr13g0389751 Putative NAD(P)-binding domain; RmlD-like substrate binding domain HanXRQChr13 - View
Hydrangea macrophylla Hma1.2p1_0050F.1_g028730 Hma1.2p1_0050F.1 + View
Lupinus albus Lalb_Chr01g0016291 K12450 - UDP-glucose 4,6-dehydratase (RHM) Lalb_Chr01 + View
Lupinus albus Lalb_Chr19g0133701 K12450 - UDP-glucose 4,6-dehydratase (RHM) Lalb_Chr19 + View
Lupinus albus Lalb_Chr25g0285631 K12450 - UDP-glucose 4,6-dehydratase (RHM) Lalb_Chr25 + View
Lotus japonicus Lj3g0005710 4.2.1.76 - UDP-glucose 4,6-dehydratase chr3 - View
Lonicera japonica Lj1A823T38 GWHAAZE00000001 + View
Lonicera japonica Lj8A145T74 GWHAAZE00000008 + View
Lactuca sativa Lsat_1_v5_gn_9_101680 K12450 - UDP-glucose 4,6-dehydratase (RHM) Lsat_1_v8_lg_9 - View
Lactuca sativa Lsat_1_v5_gn_7_100181 Lsat_1_v8_lg_7 + View
Magnolia biondii MBI06_g20683_MAGBIO AED:0.02 Chr06 - View
Malus domestica MD03G1250400 rhamnose biosynthesis 1 Chr03 - View
Malus domestica MD11G1270500 rhamnose biosynthesis 1 Chr11 - View
Manihot esculenta Manes.15G098900 Chromosome15 - View
Manihot esculenta Manes.03G078900 Chromosome03 + View
Nicotiana tabacum Nitab4.5_0000347g0010 dTDP-4-dehydrorhamnose reductase, NAD-dependent epimerase/dehydratase, NAD(P)-binding domain, dTDP-glucose 4,6-dehydratase Nitab4.5_0000347 + View
Olea europaea Oeu010035.1 chr6 - View
Olea europaea Oeu058451.1 chr21 - View
Petunia axillaris Peaxi162Scf00111g01320 dTDP-D-glucose 4,6-dehydratase Peaxi162Scf00111 + View
Punica granatum PGR031G2175 NC_045127.1 + View
Prunus persica Prupe.4G155800 K12450 - UDP-glucose 4,6-dehydratase (RHM) Pp04 + View
Populus trichocarpa Potri.001G383500 K12450 - UDP-glucose 4,6-dehydratase (RHM) Chr01 + View
Populus trichocarpa Potri.011G103700 K12450 - UDP-glucose 4,6-dehydratase (RHM) Chr11 - View
Rhododendron simsii Rhsim06G0212400 chr06 - View
Striga asiatica SGA_v2.0_scaffold4G02150 scaffold4 + View
Striga asiatica SGA_v2.0_scaffold73G24381 scaffold73 + View
Salvia bowleyana SalBow8G1354 GWHASIU00000004 - View
Salvia bowleyana SalBow7G3346 GWHASIU00000005 + View
Salix brachista Sabra11G0081900 GWHAAZH00000011 - View
Salix brachista Sabra16G0252600 GWHAAZH00000016 + View
Simmondsia chinensis Sc16g0007770 GWHAASQ00000016 - View
Simmondsia chinensis Sc03g0010730 GWHAASQ00000003 - View
Solanum lycopersicum Solyc07g062130.3 trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 (AHRD V3.3 *** A0A2I4GY66_9ROSI) SL4.0ch07 + View
Schrenkiella parvula Sp3g13010 K12450 - UDP-glucose 4,6-dehydratase (RHM) ch3-1 + View
Schrenkiella parvula Sp5g33660 4.2.1.76 - UDP-glucose 4,6-dehydratase ch5-7 + View
Schrenkiella parvula Sp1g15120 4.2.1.76 - UDP-glucose 4,6-dehydratase ch1-1 - View
Solanum pennellii Sopen07g030400 Encodes a UDP-L-Rhamnose synthase involved in the biosynthesis of rhamnose, a major monosaccharide component of pectin. Catalyzes the conversion of UDP-D-Glc to UDP-L-Rha. The dehydrogenase domain of RHM1 was shown to catalyze the conversion of UDP-D-Glc to the reaction intermediate UDP-4-keto-6-deoxy-D-Glc using recombinant protein assay but the activity of the full-length protein was not determined as it could not be expressed in Spenn-ch07 + View
Solanum tuberosum PGSC0003DMG400007059 RHM1/ROL1 ST4.03ch07 + View
Selenicereus undatus Hund10411 Scaffold_10417 + View
Trochodendron aralioides TAR626G1019 group3 - View
Trochodendron aralioides TAR627G0412 group6 - View
Theobroma cacao Thecc.07G134400 Rhamnose biosynthesis 1 Chromosome_7 - View
Tarenaya hassleriana THA.LOC104812303 trifunctional UDP-glucose 4%2C6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3%2C5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 NW_010965372.1 + View
Tarenaya hassleriana THA.LOC104822576 trifunctional UDP-glucose 4%2C6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3%2C5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM3-like NW_010966725.1 - View
Tripterygium wilfordii TWI39G0085 NC_052250.1 - View
Tripterygium wilfordii TWI38G1922 NC_052252.1 - View
Vaccinium macrocarpon vmacro11975 Similar to RHM1: Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 (Arabidopsis thaliana OX%3D3702) chr11_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1080G0370 CM024079.1 - View
Vitis vinifera GSVIVG01014091001 chr19 + View