Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0034150 PREDICTED: transcription factor PCL1 [Vitis vinifera] Chr4 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG4G15650 LG-4 + View
Aethionema arabicum Aa31LG1G11910 LG-1 + View
Acer truncatum Atru.chr3.3961 chr3 - View
Actinidia chinensis Actinidia34423 Lachesis_group15 - View
Actinidia chinensis Actinidia33775 Lachesis_group20 + View
Actinidia chinensis Actinidia23922 Lachesis_group9 + View
Arabidopsis lyrata AL5G25530 scaffold_5 + View
Arabidopsis lyrata AL8G36060 scaffold_8 + View
Amaranthus hybridus Ah.15g098560 Transcription factor LUX (Protein LUX ARRHYTHMO) (Protein PHYTOCLOCK 1) AmaHy_arrow1_Scaffold_15 + View
Amaranthus hybridus Ah.16g102510 AmaHy_arrow1_Scaffold_16 + View
Aquilegia oxysepala Aqoxy1G00885 CHR01 - View
Aquilegia oxysepala Aqoxy2G02287 CHR02 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.7BR3CD PF00249 - Myb-like DNA-binding domain (Myb_DNA-binding) arahy.Tifrunner.gnm1.Arahy.03 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.893SZW PF00249 - Myb-like DNA-binding domain (Myb_DNA-binding) arahy.Tifrunner.gnm1.Arahy.18 - View
Arabidopsis thaliana AT5G59570 Homeodomain-like superfamily protein Encodes BOA (BROTHER OF LUX ARRHYTHMO)%2C a component of the circadian clock. Homeodomain-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Myb-like DNA-binding domain%2C SHAQKYF class (InterPro:IPR006447)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G46640.2)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr5 + View
Arabidopsis thaliana AT3G46640 Homeodomain-like superfamily protein Encodes a myb family transcription factor with a single Myb DNA-binding domain (type SHAQKYF) that is unique to plants and is essential for circadian rhythms%2C specifically for transcriptional regulation within the circadian clock. LUX is required for normal rhythmic expression of multiple clock outputs in both constant light and darkness. It is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter. PHYTOCLOCK 1 (PCL1)%3B CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C Myb-like DNA-binding domain%2C SHAQKYF class (InterPro:IPR006447)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT5G59570.1)%3B Has 1709 Blast hits to 1707 proteins in 80 species: Archae - 0%3B Bacteria - 29%3B Metazoa - 20%3B Fungi - 11%3B Plants - 1622%3B Viruses - 0%3B Other Eukaryotes - 27 (source: NCBI BLink). PHYTOCLOCK 1 (PCL1)%3B CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C Myb-like DNA-binding domain%2C SHAQKYF class (InterPro:IPR006447)%2C HTH transcriptional regulator%2C Myb-type%2C DNA-binding (InterPro:IPR017930)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT5G59570.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink). Chr3 + View
Amborella trichopoda ATR0559G174 AmTr_v1.0_scaffold00012 + View
Brassica carinata BcaC01g01898 ChrC01 - View
Brassica napus C01p33230 C01 - View
Brassica napus A06p20850 A06 - View
Brassica oleracea BolC3t19354H C3 + View
Brassica oleracea BolC1t03259H C1 - View
Brassica rapa BraA06t25163Z A06 - View
Beta vulgaris EL10Ac7g16056 PF00249 - Myb-like DNA-binding domain (Myb_DNA-binding) Chr7_EL10_PGA_scaffold5 + View
Beta vulgaris EL10Ac2g04717 PF00249 - Myb-like DNA-binding domain (Myb_DNA-binding) Chr2_EL10_PGA_scaffold6 - View
Capsicum annuum CAN.G141.6 PGAv.1.6.scaffold141 + View
Capsicum annuum CAN.G394.73 PGAv.1.6.scaffold394 + View
Cicer arietinum L. Ca_20620_v3 Ca_LG6_v3 - View
Coffea canephora Cc01_g13250 Putative Homeodomain-like superfamily protein chr1 + View
Citrus clementina Ciclev10028658m.g scaffold_8 + View
Ceratophyllum demersum CDE02G4552 1 + View
Ceratophyllum demersum CDE09G0055 7 - View
Ceratophyllum demersum CDE04G1944 2 + View
Carpinus fangiana Cfa011539 Cfa04 + View
Cardamine hirsuta CARHR155170 Response regulator 8 Chr5 - View
Carya illinoinensis CiPaw.13G090400 PF00249 - Myb-like DNA-binding domain (Myb_DNA-binding) Chr13 - View
Citrullus lanatus ClCG02G019950 Two-component response regulator ARR1 CG_Chr02 - View
Citrullus lanatus ClCG03G001320 Two-component response regulator ARR1 CG_Chr03 - View
Cucumis melo MELO3C025894.2 Two-component response regulator chr11 + View
Cucumis melo MELO3C020611.2 Two-component response regulator chr12 - View
Corchorus olitorius COL.COLO4_18566 hypothetical protein AWUE01016476.1 + View
Carica papaya Cpa.g.sc81.106 supercontig_81 - View
Chenopodium quinoa AUR62012124 LUX: Transcription factor LUX C_Quinoa_Scaffold_1995 + View
Chenopodium quinoa AUR62040712 LUX: Transcription factor LUX C_Quinoa_Scaffold_1465 - View
Capsella rubella Carub.0005s1291 PTHR31442//PTHR31442:SF6 - FAMILY NOT NAMED // DNA-BINDING DOMAIN-CONTAINING PROTEIN-RELATED scaffold_5 + View
Capsella rubella Carub.0008s2024 PF00249 - Myb-like DNA-binding domain (Myb_DNA-binding) scaffold_8 + View
Cucumis sativus L. CsaV3_1G034500 transcription factor PCL1-like chr1 + View
Cucumis sativus L. CsaV3_6G016650 transcription factor PCL1 chr6 - View
Cucumis sativus L. CsaV3_7G009940 transcription factor PCL1 chr7 + View
Daucus carota DCAR_005950 hypothetical protein DCARv2_Chr2 - View
Daucus carota DCAR_018916 hypothetical protein DCARv2_Chr5 + View
Davidia involucrata Dinv42983 GWHABJS00000085 + View
Davidia involucrata Dinv34273 GWHABJS00000007 + View
Davidia involucrata Dinv17037 GWHABJS00000529 + View
Davidia involucrata Dinv43116 GWHABJS00000085 - View
Durio zibethinus Duzib170G0972 NW_019167871.1 - View
Erigeron canadensis ECA247G3981 Conyza_canadensis_scaffold:7 + View
Erigeron canadensis ECA248G1863 Conyza_canadensis_scaffold:9 - View
Eucalyptus grandis Eucgr.B02313 Chr02 - View
Erythranthe guttata Migut.D00884 scaffold_4 - View
Eutrema salsugineum Thhalv10002605m.g PTHR31442:SF6 - DNA-BINDING DOMAIN-CONTAINING PROTEIN-RELATED scaffold_4 - View
Fragaria x ananassa FAN25G3764 PF00249 - Myb-like DNA-binding domain (Myb_DNA-binding) Fvb3-1 - View
Fragaria x ananassa FAN21G2009 PF00249 - Myb-like DNA-binding domain (Myb_DNA-binding) Fvb3-2 + View
Fragaria x ananassa FAN11G0260 PF00249 - Myb-like DNA-binding domain (Myb_DNA-binding) Fvb3-4 - View
Fragaria x ananassa FAN16G3506 PF00249 - Myb-like DNA-binding domain (Myb_DNA-binding) Fvb3-3 + View
Fragaria vesca FvH4_3g36890 PF00249 - Myb-like DNA-binding domain (Myb_DNA-binding) Fvb3 + View
Gossypium hirsutum Gohir.A03G045000 PF00249 - Myb-like DNA-binding domain (Myb_DNA-binding) A03 - View
Gossypium hirsutum Gohir.D07G104300 PF00249 - Myb-like DNA-binding domain (Myb_DNA-binding) D07 + View
Gossypium hirsutum Gohir.D05G094100 PF00249 - Myb-like DNA-binding domain (Myb_DNA-binding) D05 - View
Gossypium hirsutum Gohir.A05G093600 PF00249 - Myb-like DNA-binding domain (Myb_DNA-binding) A05 - View
Gossypium hirsutum Gohir.A07G100200 PF00249 - Myb-like DNA-binding domain (Myb_DNA-binding) A07 + View
Gossypium hirsutum Gohir.D03G122000 PF00249 - Myb-like DNA-binding domain (Myb_DNA-binding) D03 - View
Glycine max Glyma.12G060200 PF00249 - Myb-like DNA-binding domain (Myb_DNA-binding) Gm12 - View
Glycine max Glyma.11G136600 PF00249 - Myb-like DNA-binding domain (Myb_DNA-binding) Gm11 - View
Gossypium raimondii Gorai.003G129100 Chr03 - View
Gossypium raimondii Gorai.009G097100 Chr09 - View
Gossypium raimondii Gorai.001G112200 Chr01 + View
Hydrangea macrophylla Hma1.2p1_0615F.1_g189720 Hma1.2p1_0615F.1 - View
Lotus japonicus Lj3g0001786 PF00249 - Myb-like DNA-binding domain (Myb_DNA-binding) chr3 - View
Lonicera japonica Lj2P1068T26 GWHAAZE00000002 + View
Lonicera japonica Lj1P147T66 GWHAAZE00000001 - View
Lactuca sativa Lsat_1_v5_gn_9_24661 PF00249 - Myb-like DNA-binding domain (Myb_DNA-binding) Lsat_1_v8_lg_9 - View
Lactuca sativa Lsat_1_v5_gn_5_169461 Lsat_1_v8_lg_5 + View
Lactuca sativa Lsat_1_v5_gn_8_72921 PF00249 - Myb-like DNA-binding domain (Myb_DNA-binding) Lsat_1_v8_lg_8 + View
Magnolia biondii MBI14_g08027_MAGBIO AED:0.00 Chr14 + View
Magnolia biondii MBI05_g38474_MAGBIO AED:0.02 Chr05 + View
Malus domestica MD11G1095900 Homeodomain-like superfamily protein Chr11 - View
Malus domestica MD03G1086800 Homeodomain-like superfamily protein Chr03 - View
Manihot esculenta Manes.02G129800 Chromosome02 - View
Manihot esculenta Manes.01G170000 Chromosome01 - View
Medicago truncatula Medtr4g064730 myb-like DNA-binding domain, shaqkyf class protein chr4 + View
Nelumbo nucifera Nn2g11179 chr2 + View
Nelumbo nucifera Nn2g13421 chr2 + View
Nicotiana tabacum Nitab4.5_0000102g0300 SANT/Myb domain, Myb domain, plants, Myb domain, Homeodomain-like Nitab4.5_0000102 + View
Olea europaea Oeu004174.1 chr4 + View
Olea europaea Oeu007655.1 scaffold1280 + View
Oryza sativa ssp. japonica Os01g0844900 Homeodomain-like containing protein. chr01 + View
Oryza sativa ssp. japonica Os01g0971800 Transcription factor with a GARP DNA-binding domain, Photoperiodic control of flowering time, Clock associated-component chr01 - View
Petunia axillaris Peaxi162Scf00481g00327 StPCL1 [Solanum tuberosum] Peaxi162Scf00481 + View
Petunia axillaris Peaxi162Scf00265g00015 Homeodomain-like superfamily protein Peaxi162Scf00265 + View
Punica granatum PGR119G1281 NC_045132.1 + View
Prunus persica Prupe.6G071400 PF00249 - Myb-like DNA-binding domain (Myb_DNA-binding) Pp06 - View
Papaver somniferum PSO339G1776 NC_039366.1 + View
Papaver somniferum PSO339G5344 NC_039366.1 + View
Papaver somniferum PSO063G0138 NC_039364.1 + View
Populus trichocarpa Potri.009G035000 PTHR31442//PTHR31442:SF6 - FAMILY NOT NAMED // DNA-BINDING DOMAIN-CONTAINING PROTEIN-RELATED Chr09 + View
Populus trichocarpa Potri.001G243600 PTHR31442//PTHR31442:SF6 - FAMILY NOT NAMED // DNA-BINDING DOMAIN-CONTAINING PROTEIN-RELATED Chr01 + View
Phaseolus vulgaris Phvul.011G062100 PF00249 - Myb-like DNA-binding domain (Myb_DNA-binding) Chr11 - View
Quercus lobata QL01p030461 1 - View
Rosa chinensis RcHm_v2.0_Chr5g0066111 RcHm_v2.0_Chr5 + View
Rhododendron simsii Rhsim13G0077900 chr13 - View
Rhododendron simsii Rhsim01G0231100 chr01 + View
Salvia bowleyana SalBow6G5625 GWHASIU00000002 - View
Salix brachista Sabra16G0147900 GWHAAZH00000016 + View
Salix brachista Sabra09G0025000 GWHAAZH00000009 + View
Simmondsia chinensis Sc11g0007800 GWHAASQ00000011 - View
Simmondsia chinensis Sc12g0001280 GWHAASQ00000012 - View
Simmondsia chinensis Sc10g0001770 GWHAASQ00000010 + View
Simmondsia chinensis Sc21g0005990 GWHAASQ00000021 + View
Sechium edule Sed0006622 LG01 + View
Sechium edule Sed0001074 LG13 + View
Sechium edule Sed0005958 LG01 + View
Sapria himalayana SHI05911 scaffold2_22354274 - View
Solanum lycopersicum Solyc06g005680.4 Two-component response regulator (AHRD V3.3 *-* C0HE02_MAIZE) SL4.0ch06 + View
Solanum lycopersicum Solyc06g076350.3 LePCL1 SL4.0ch06 + View
Schrenkiella parvula Sp5g15040 PF00249 - Myb-like DNA-binding domain (Myb_DNA-binding) ch5-1 - View
Schrenkiella parvula Sp6g21270 PF00249 - Myb-like DNA-binding domain (Myb_DNA-binding) ch6-6 + View
Solanum pennellii Sopen06g001660 Encodes a myb family transcription factor with a single Myb DNA-binding domain (type SHAQKYF) that is unique to plants and is essential for circadian rhythms, specifically for transcriptional regulation within the circadian clock. LUX is required for normal rhythmic expression of multiple clock outputs in both constant light and darkness. It is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter. | PHYTOCLOCK 1 (PCL1) | CONTAINS InterPro DOMAIN/s: Myb, DNA-binding , Homeodomain-like , Homeodomain-related , Myb-like DNA-binding domain, SHAQKYF class , HTH transcriptional regulator, Myb-type, DNA-binding | BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein . Spenn-ch06 + View
Solanum pennellii Sopen06g032760 Encodes a myb family transcription factor with a single Myb DNA-binding domain (type SHAQKYF) that is unique to plants and is essential for circadian rhythms, specifically for transcriptional regulation within the circadian clock. LUX is required for normal rhythmic expression of multiple clock outputs in both constant light and darkness. It is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter. | PHYTOCLOCK 1 (PCL1) | CONTAINS InterPro DOMAIN/s: Myb, DNA-binding , Homeodomain-like , Homeodomain-related , Myb-like DNA-binding domain, SHAQKYF class , HTH transcriptional regulator, Myb-type, DNA-binding | BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein . Spenn-ch06 + View
Solanum tuberosum PGSC0003DMG400002144 NbPCL1 protein ST4.03ch06 - View
Solanum tuberosum PGSC0003DMG400023534 Type-B response regulator ST4.03ch05 + View
Solanum tuberosum PGSC0003DMG400030328 StPCL1 protein ST4.03ch06 + View
Selenicereus undatus Hund13787 Scaffold_33679 + View
Selenicereus undatus Hund04927 Scaffold_19641 - View
Trochodendron aralioides TAR560G0008 contig394 - View
Trochodendron aralioides TAR633G0513 group2 - View
Trochodendron aralioides TAR623G1059 group7 + View
Trochodendron aralioides TAR636G0509 group1 + View
Theobroma cacao Thecc.09G317000 Homeodomain-like superfamily protein Chromosome_9 - View
Tarenaya hassleriana THA.LOC104827402 transcription factor BOA-like NW_010967707.1 - View
Tarenaya hassleriana THA.LOC104816077 transcription factor LUX-like NW_010965696.1 - View
Vaccinium macrocarpon vmacro14553 Similar to LUX: Transcription factor LUX (Arabidopsis thaliana OX%3D3702) chr7_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro03037 Similar to LUX: Transcription factor LUX (Arabidopsis thaliana OX%3D3702) chr9_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1127G1858 CM024076.1 - View
Vanilla planifolia HPP92_019841 Two-component response regulator *** CM028159.1 + View
Vitis vinifera GSVIVG01024916001 chr6 + View