Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0000731 PREDICTED: probable histone H2A variant 1 [Solanum lycopersicum] Chr13 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr5.1545 chr5 - View
Actinidia chinensis Actinidia19974 Lachesis_group19 + View
Arabidopsis lyrata AL1G19310 scaffold_1 - View
Avicennia marina MSTRG.21517 ScioBoG_26769_HRSCAF_26899 + View
Avicennia marina MSTRG.18277 ScioBoG_22153_HRSCAF_22259 - View
Amaranthus hybridus Ah.02g111350 AmaHy_arrow1_Scaffold_2 - View
Aquilegia oxysepala Aqoxy2G03494 CHR02 - View
Aquilegia oxysepala Aqoxy5G00376 CHR05 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.FUQ01W PTHR23430//PTHR23430:SF76 - HISTONE H2A // HISTONE H2A VARIANT 1-RELATED arahy.Tifrunner.gnm1.Arahy.12 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.FT13IX PTHR23430//PTHR23430:SF76 - HISTONE H2A // HISTONE H2A VARIANT 1-RELATED arahy.Tifrunner.gnm1.Arahy.02 - View
Arabidopsis thaliana AT1G08880 Histone superfamily protein Encodes HTA5%2C a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation%2C rapid accumulation of phosphorylated H2AX (%26#947%3B-H2AX) occurs around the break site. %01H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse %26#947%3B-H2AX foci throughout the chromatin. However%2C their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S%2C no %26#947%3B-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear%2C there is an equally swift accumulation of %26#947%3B-H2AX to a maximum of %3E50 diffuse foci. The level of %26#947%3BH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 10%E2%80%9320 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin. H2AXA%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: nucleosome assembly%3B LOCATED IN: nucleus%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119)%2C Histone-fold (InterPro:IPR009072)%2C Histone core (InterPro:IPR007125)%3B BEST Arabidopsis thaliana protein match is: gamma histone variant H2AX (TAIR:AT1G54690.1)%3B Has 3916 Blast hits to 3911 proteins in 363 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2550%3B Fungi - 318%3B Plants - 612%3B Viruses - 4%3B Other Eukaryotes - 432 (source: NCBI BLink). Chr1 - View
Beta vulgaris EL10Ac5g10481 KOG1757 - Histone 2A Chr5_EL10_PGA_scaffold2 + View
Capsicum annuum CAN.G771.10 PGAv.1.6.scaffold771 - View
Cannabis sativa CANSAT25G1272 NC_044370.1 + View
Cicer arietinum L. Ca_09719_v3 Ca_LG4_v3 + View
Corylus avellana Haze_24518 Similar to H2AV: Histone H2A variant 1 (Arabidopsis thaliana OX%3D3702) 8 - View
Coffea canephora Cc01_g18930 Histone H2A variant 1 chr1 + View
Citrus clementina Ciclev10022798m.g scaffold_3 + View
Carpinus fangiana Cfa002312 Cfa01 - View
Cardamine hirsuta CARHR008790 Histone H2A Chr1 - View
Carya illinoinensis CiPaw.03G256100 PTHR23430//PTHR23430:SF76 - HISTONE H2A // HISTONE H2A VARIANT 1-RELATED Chr03 - View
Citrullus lanatus ClCG07G000560 Histone H2A CG_Chr07 - View
Cucumis melo MELO3C014317.2 Histone H2A chr05 - View
Chenopodium quinoa AUR62032272 Os03g0743400: Probable histone H2A variant 3 C_Quinoa_Scaffold_1762 + View
Chenopodium quinoa AUR62011959 Os03g0743400: Probable histone H2A variant 3 C_Quinoa_Scaffold_2008 + View
Cucumis sativus L. CsaV3_2G013770 Histone H2A chr2 + View
Daucus carota DCAR_012510 hypothetical protein DCARv2_Chr3 - View
Daucus carota DCAR_002691 hypothetical protein DCARv2_Chr1 - View
Daucus carota DCAR_018440 hypothetical protein DCARv2_Chr5 - View
Davidia involucrata Dinv34557 GWHABJS00000010 + View
Davidia involucrata Dinv22490 GWHABJS00000007 - View
Durio zibethinus Duzib138G0926 NW_019167893.1 - View
Durio zibethinus Duzib133G0622 NW_019167938.1 - View
Durio zibethinus Duzib211G0256 NW_019168049.1 - View
Erigeron canadensis ECA248G1123 Conyza_canadensis_scaffold:9 + View
Erigeron canadensis ECA247G0317 Conyza_canadensis_scaffold:7 + View
Eucalyptus grandis Eucgr.K03318 Chr11 + View
Erythranthe guttata Migut.D00345 scaffold_4 + View
Eutrema salsugineum Thhalv10008780m.g K11251 - histone H2A (H2A) scaffold_5 + View
Fragaria x ananassa FAN15G3447 PTHR23430:SF76 - HISTONE H2A VARIANT 1-RELATED Fvb2-4 + View
Fragaria x ananassa FAN27G0375 PTHR23430//PTHR23430:SF76 - HISTONE H2A // HISTONE H2A VARIANT 1-RELATED Fvb2-1 + View
Fragaria x ananassa FAN24G0976 PTHR23430:SF76 - HISTONE H2A VARIANT 1-RELATED Fvb2-2 - View
Fragaria vesca FvH4_2g22780 PTHR23430//PTHR23430:SF76 - HISTONE H2A // HISTONE H2A VARIANT 1-RELATED Fvb2 + View
Gossypium hirsutum Gohir.D11G131900 PTHR23430//PTHR23430:SF76 - HISTONE H2A // HISTONE H2A VARIANT 1-RELATED D11 - View
Gossypium hirsutum Gohir.A11G126300 PTHR23430//PTHR23430:SF76 - HISTONE H2A // HISTONE H2A VARIANT 1-RELATED A11 - View
Gossypium hirsutum Gohir.A07G208100 PTHR23430//PTHR23430:SF76 - HISTONE H2A // HISTONE H2A VARIANT 1-RELATED A07 - View
Gossypium hirsutum Gohir.A08G187600 PTHR23430//PTHR23430:SF76 - HISTONE H2A // HISTONE H2A VARIANT 1-RELATED A08 - View
Gossypium hirsutum Gohir.D08G205900 PTHR23430//PTHR23430:SF76 - HISTONE H2A // HISTONE H2A VARIANT 1-RELATED D08 - View
Gossypium hirsutum Gohir.D07G214100 PTHR23430//PTHR23430:SF76 - HISTONE H2A // HISTONE H2A VARIANT 1-RELATED D07 - View
Glycine max Glyma.10G031200 PTHR23430//PTHR23430:SF76 - HISTONE H2A // HISTONE H2A VARIANT 1-RELATED Gm10 - View
Glycine max Glyma.02G143200 PTHR23430//PTHR23430:SF76 - HISTONE H2A // HISTONE H2A VARIANT 1-RELATED Gm02 + View
Glycine max Glyma.03G158100 PTHR23430//PTHR23430:SF76 - HISTONE H2A // HISTONE H2A VARIANT 1-RELATED Gm03 - View
Glycine max Glyma.19G160400 PTHR23430//PTHR23430:SF76 - HISTONE H2A // HISTONE H2A VARIANT 1-RELATED Gm19 - View
Gossypium raimondii Gorai.004G217900 Chr04 - View
Gossypium raimondii Gorai.001G242100 Chr01 - View
Gossypium raimondii Gorai.007G141000 Chr07 - View
Helianthus annuus HanXRQChr15g0466941 Putative histone H2A; Histone-fold; Histone H2A, C-terminal domain; Histone H2A conserved site HanXRQChr15 - View
Hydrangea macrophylla Hma1.2p1_0760F.1_g214200 Hma1.2p1_0760F.1 - View
Hydrangea macrophylla Hma1.2p1_0172F.1_g076110 Hma1.2p1_0172F.1 - View
Lupinus albus Lalb_Chr06g0162721 PTHR23430:SF76 - HISTONE H2A VARIANT 1-RELATED Lalb_Chr06 + View
Lupinus albus Lalb_Chr02g0142461 PTHR23430:SF76 - HISTONE H2A VARIANT 1-RELATED Lalb_Chr02 + View
Lotus japonicus Lj5g0020874 PTHR23430//PTHR23430:SF76 - HISTONE H2A // HISTONE H2A VARIANT 1-RELATED chr5 + View
Lotus japonicus Lj1g0005530 PTHR23430//PTHR23430:SF76 - HISTONE H2A // HISTONE H2A VARIANT 1-RELATED chr1 + View
Lonicera japonica Lj1C56T17 GWHAAZE00000001 - View
Lonicera japonica Lj2P1162T17 GWHAAZE00000002 + View
Lactuca sativa Lsat_1_v5_gn_5_185180 KOG1757 - Histone 2A Lsat_1_v8_lg_5 + View
Lactuca sativa Lsat_1_v5_gn_8_94420 KOG1757 - Histone 2A Lsat_1_v8_lg_8 + View
Magnolia biondii MBI11_g26136_MAGBIO AED:0.15 Chr11 - View
Malus domestica MD11G1276900 histone H2A 11 Chr11 + View
Malus domestica MD03G1256100 histone H2A 11 Chr03 + View
Manihot esculenta Manes.01G202800 Chromosome01 + View
Manihot esculenta Manes.05G083000 Chromosome05 - View
Medicago truncatula Medtr1g071040 core histone H2A/H2B/H3/H4 chr1 + View
Nelumbo nucifera Nn3g19468 chr3 - View
Nicotiana tabacum Nitab4.5_0000187g0050 Histone core, Histone H2A, Histone-fold Nitab4.5_0000187 - View
Olea europaea Oeu011514.2 scaffold1439 - View
Olea europaea Oeu025778.1 chr16 - View
Oryza sativa ssp. japonica Os03g0743400 Similar to H2A protein. chr03 + View
Punica granatum PGR044G1717 NC_045134.1 + View
Prunus persica Prupe.8G233200 PTHR23430:SF76 - HISTONE H2A VARIANT 1-RELATED Pp08 + View
Pisum sativum Psat6g058160 Histone H2A signature chr6LG2 + View
Papaver somniferum PSO832G3189 NC_039367.1 + View
Papaver somniferum PSO210G7111 NC_039359.1 - View
Papaver somniferum PSO461G0021 NW_020646638.1 - View
Papaver somniferum PSO210G7411 NC_039359.1 - View
Populus trichocarpa Potri.002G046400 PTHR23430//PTHR23430:SF76 - HISTONE H2A // HISTONE H2A VARIANT 1-RELATED Chr02 + View
Populus trichocarpa Potri.005G216600 PTHR23430//PTHR23430:SF76 - HISTONE H2A // HISTONE H2A VARIANT 1-RELATED Chr05 - View
Phaseolus vulgaris Phvul.001G155700 PTHR23430:SF76 - HISTONE H2A VARIANT 1-RELATED Chr01 - View
Phaseolus vulgaris Phvul.007G176000 PTHR23430:SF76 - HISTONE H2A VARIANT 1-RELATED Chr07 - View
Quercus lobata QL12p042515 12 - View
Rosa chinensis RcHm_v2.0_Chr6g0289701 RcHm_v2.0_Chr6 + View
Rhododendron simsii Rhsim01G0271200 chr01 + View
Rhododendron simsii Rhsim13G0030100 chr13 - View
Striga asiatica SGA_v2.0_scaffold138G35292 scaffold138 + View
Striga asiatica SGA_v2.0_scaffold1G00548 scaffold1 - View
Salvia bowleyana SalBow4G1847 GWHASIU00000008 + View
Salix brachista Sabra05G0166100 GWHAAZH00000005 - View
Salix brachista Sabra02G0037400 GWHAAZH00000002 + View
Simmondsia chinensis Sc05g0001100 GWHAASQ00000005 + View
Sechium edule Sed0021925 LG05 - View
Solanum lycopersicum Solyc09g065755.1 Histone H2A (AHRD V3.3 *** A0A2G2V7F5_CAPBA) SL4.0ch09 - View
Solanum lycopersicum Solyc06g084090.4 Histone H2A (AHRD V3.3 *** A0A2G3CCJ9_CAPCH) SL4.0ch06 + View
Solanum pennellii Sopen09g027500 Probable histone H2A variant 3 - Oryza sativa (Rice), Encodes HTA8, a histone H2A protein. | histone H2A 8 (HTA8) | FUNCTIONS IN: DNA binding | INVOLVED IN: regulation of flower development | LOCATED IN: nucleolus | EXPRESSED IN: 21 plant structures | EXPRESSED DURING: 12 growth stages | CONTAINS InterPro DOMAIN/s: Histone H2A , Histone-fold , Histone core | BEST Arabidopsis thaliana protein match is: histone H2A 11 Spenn-ch09 - View
Solanum pennellii Sopen06g035480 Probable histone H2A variant 1 - Oryza sativa (Rice), Encodes HTA11, a histone H2A protein. | histone H2A 11 (HTA11) | FUNCTIONS IN: DNA binding | INVOLVED IN: flower development, detection of temperature stimulus, defense response to bacterium | LOCATED IN: nucleus, nucleosome | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Histone H2A , Histone-fold , Histone core | BEST Arabidopsis thaliana protein match is: histone H2A 8 Spenn-ch06 + View
Solanum tuberosum PGSC0003DMG400019306 Histone H2A variant 1 ST4.03ch09 - View
Solanum tuberosum PGSC0003DMG401020138 Histone H2A variant 1 ST4.03ch06 + View
Selenicereus undatus Hund02869 Scaffold_33678 - View
Trochodendron aralioides TAR365G0032 group16 + View
Trochodendron aralioides TAR636G1574 group1 + View
Theobroma cacao Thecc.01G269200 Histone H2A 11 Chromosome_1 + View
Tripterygium wilfordii TWI12G0782 NC_052243.1 - View
Utricularia gibba unitig_0.g143 unitig_0 - View
Utricularia gibba unitig_26.g10159 unitig_26 + View
Vaccinium macrocarpon vmacro14882 Similar to Os03g0743400: Probable histone H2A variant 3 (Oryza sativa subsp. japonica OX%3D39947) chr7_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro02621 Similar to Os03g0743400: Probable histone H2A variant 3 (Oryza sativa subsp. japonica OX%3D39947) chr9_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo0720G1095 CM024071.1 + View
Vigna mungo VMungo1383G2904 CM024070.1 - View
Vitis vinifera GSVIVG01003139001 chrUn - View
Zea mays Zm00001eb056890 Zm00001e005636 Histone H2A 1 + View