Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG9G12040 LG-9 + View
Arabidopsis thaliana AT4G09960 K-box region and MADS-box transcription factor family protein Encodes a MADS box transcription factor expressed in the carpel and ovules. Plays a maternal role in fertilization and seed development. SEEDSTICK (STK)%3B FUNCTIONS IN: protein binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%2C ovule development%2C carpel development%3B LOCATED IN: nucleus%3B EXPRESSED IN: 11 plant structures%3B EXPRESSED DURING: 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%3B CONTAINS InterPro DOMAIN/s: Transcription factor%2C MADS-box (InterPro:IPR002100)%2C Transcription factor%2C K-box (InterPro:IPR002487)%3B BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT2G42830.1)%3B Has 7129 Blast hits to 7128 proteins in 907 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 637%3B Fungi - 309%3B Plants - 6073%3B Viruses - 0%3B Other Eukaryotes - 104 (source: NCBI BLink). SEEDSTICK (STK)%3B FUNCTIONS IN: protein binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%2C ovule development%2C carpel development%3B LOCATED IN: nucleus%3B EXPRESSED IN: 11 plant structures%3B EXPRESSED DURING: 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%3B CONTAINS InterPro DOMAIN/s: Transcription factor%2C MADS-box (InterPro:IPR002100)%2C Transcription factor%2C K-box (InterPro:IPR002487)%3B BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT2G42830.2). Chr4 - View
Arabidopsis thaliana AT1G71692 AGAMOUS-like 12 Encodes a member of the MADS box family of transcription factors. Involved in root cell differentiation and flowering time. Loss of function mutations have abnormal cellular differentiation in the roots and are late flowering. AGL12 along with AGL14%2C and AGL17 is preferentially expressed in root tissues and represent the only characterized MADS box genes expressed in roots. AGAMOUS-like 12 (AGL12)%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: vegetative to reproductive phase transition of meristem%2C root development%3B LOCATED IN: nucleus%3B EXPRESSED IN: 11 plant structures%3B EXPRESSED DURING: 4 anthesis%2C C globular stage%2C D bilateral stage%2C E expanded cotyledon stage%3B CONTAINS InterPro DOMAIN/s: Transcription factor%2C MADS-box (InterPro:IPR002100)%2C Transcription factor%2C K-box (InterPro:IPR002487)%3B BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT3G58780.1)%3B Has 6551 Blast hits to 6549 proteins in 840 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 621%3B Fungi - 300%3B Plants - 5564%3B Viruses - 0%3B Other Eukaryotes - 66 (source: NCBI BLink). Chr1 - View
Brassica napus C02p28910 C02 + View
Brassica napus A07p37820 A07 - View
Corylus avellana Haze_13916 Similar to AGL12: Agamous-like MADS-box protein AGL12 (Arabidopsis thaliana OX%3D3702) 5 - View
Cucumis melo MELO3C033521.2 AGAMOUS MADS box factor transcription factor chr09 - View
Chenopodium quinoa AUR62013427 PMADS2: Floral homeotic protein PMADS 2 C_Quinoa_Scaffold_1611 + View
Capsella rubella Carub.0006s2850 scaffold_6 - View
Eucalyptus grandis Eucgr.F02956 Chr06 + View
Eutrema salsugineum Thhalv10028938m.g PTHR11945:SF170 - AGAMOUS-LIKE MADS-BOX PROTEIN AGL11 scaffold_3 + View
Fragaria x ananassa FAN04G0095 PTHR11945//PTHR11945:SF238 - MADS BOX PROTEIN // SUBFAMILY NOT NAMED Fvb5-4 - View
Manihot esculenta Manes.18G120200 Chromosome18 + View
Medicago truncatula Medtr3g005530 MADS-box transcription factor chr3 - View
Olea europaea Oeu006602.1 scaffold124 - View
Papaver somniferum PSO782G5613 NC_039365.1 + View
Papaver somniferum PSO170G6311 NC_039360.1 + View
Populus trichocarpa Potri.019G076800 PTHR11945:SF152 - AGAMOUS-LIKE MADS-BOX PROTEIN AGL12 Chr19 - View
Rhododendron simsii Rhsim12G0003300 chr12 - View
Striga asiatica SGA_v2.0_scaffold118G32570 scaffold118 - View
Striga asiatica SGA_v2.0_scaffold24G10612 scaffold24 - View
Salix brachista Sabra19G0088100 GWHAAZH00000019 - View
Solanum pennellii Sopen06g023350 a MADS box transcription factor expressed in the carpel and ovules | SEEDSTICK (STK) | FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity | INVOLVED IN: regulation of transcription, DNA-dependent, ovule development, carpel development | LOCATED IN: nucleus | EXPRESSED IN: 11 plant structures | EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage | CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box , Transcription factor, K-box | BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein ., Floral homeotic protein AGAMOUS (GAG2) - Panax ginseng (Korean ginseng) Spenn-ch06 + View
Tarenaya hassleriana THA.LOC104815939 agamous-like MADS-box protein AGL11 isoform X1 NW_010960187.1 + View