Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0000639 PREDICTED: LIM domain-containing protein WLIM1 [Vitis vinifera] Chr9 - View
CSS0043578 PREDICTED: LIM domain-containing protein WLIM1 [Vitis vinifera] Contig72 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG1G4730 LG-1 + View
Acer truncatum Atru.chr5.2333 chr5 - View
Acer truncatum Atru.chr13.838 chr13 + View
Actinidia chinensis Actinidia00367 Lachesis_group12 + View
Actinidia chinensis Actinidia38107 Lachesis_group7 + View
Avicennia marina MSTRG.24377 ScioBoG_4088_HRSCAF_4107 + View
Avicennia marina MSTRG.25033 ScioBoG_4119_HRSCAF_4138 - View
Avicennia marina MSTRG.27765 ScioBoG_94932_HRSCAF_95134 + View
Amaranthus hybridus Ah.05g167070 LIM domain-containing protein WLIM1 (Widely-expressed LIM protein 1) (AtWLIM1) AmaHy_arrow1_Scaffold_5 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.GEQ2UZ K09377 - cysteine and glycine-rich protein (CSRP) arahy.Tifrunner.gnm1.Arahy.09 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.RV2JC2 KOG1700 - Regulatory protein MLP and related LIM proteins arahy.Tifrunner.gnm1.Arahy.19 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.NAU3FJ PTHR24206:SF35 - TRANSCRIPTION FACTOR-RELATED arahy.Tifrunner.gnm1.Arahy.06 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.SI0BUE PTHR24206:SF35 - TRANSCRIPTION FACTOR-RELATED arahy.Tifrunner.gnm1.Arahy.16 - View
Arabidopsis thaliana AT1G10200 GATA type zinc finger transcription factor family protein Encodes a member of the Arabidopsis LIM proteins: a family of actin bundlers with distinct expression patterns. WLIM1%2C WLIM2a%2C and WLIM2b are widely expressed%2C whereas PLIM2a%2C PLIM2b%2C and PLIM2c are predominantly expressed in pollen. Regulates actin cytoskeleton organization. WLIM1%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%2C zinc ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C LIM-type (InterPro:IPR001781)%3B BEST Arabidopsis thaliana protein match is: GATA type zinc finger transcription factor family protein (TAIR:AT2G39900.1)%3B Has 4354 Blast hits to 2727 proteins in 153 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 3462%3B Fungi - 43%3B Plants - 506%3B Viruses - 0%3B Other Eukaryotes - 343 (source: NCBI BLink). Chr1 - View
Amborella trichopoda ATR0739G106 AmTr_v1.0_scaffold00065 - View
Brassica carinata BcaC07g38544 ChrC07 + View
Brassica napus C08p13510 C08 - View
Brassica napus A08p34110 A08 + View
Brassica oleracea BolC8t48986H C8 - View
Brassica oleracea BolC5t29584H C5 - View
Brassica rapa BraA08t35323Z A08 + View
Brassica rapa BraA06t23900Z A06 - View
Beta vulgaris EL10Ac1g02372 PTHR24206//PTHR24206:SF35 - FAMILY NOT NAMED // TRANSCRIPTION FACTOR-RELATED Chr1_EL10_PGA_scaffold3 + View
Capsicum annuum CAN.G724.30 PGAv.1.6.scaffold724 + View
Cannabis sativa CANSAT25G1091 NC_044370.1 - View
Cicer arietinum L. Ca_13214_v3 Ca_LG4_v3 - View
Cicer arietinum L. Ca_15899_v3 Ca_LG5_v3 - View
Corylus avellana Haze_22430 Similar to WLIM1: LIM domain-containing protein WLIM1 (Arabidopsis thaliana OX%3D3702) 3 - View
Coffea canephora Cc10_g05010 Pollen-specific protein SF3 chr10 + View
Coffea canephora Cc02_g19900 Pollen-specific protein SF3 chr2 + View
Citrus clementina Ciclev10002540m.g scaffold_5 + View
Citrus clementina Ciclev10029316m.g scaffold_8 - View
Carpinus fangiana Cfa013772 Cfa05 - View
Cardamine hirsuta CARHR010300 LIM domain protein Chr1 - View
Carya illinoinensis CiPaw.05G018400 K09377 - cysteine and glycine-rich protein (CSRP) Chr05 + View
Carya illinoinensis CiPaw.07G174300 PTHR24206//PTHR24206:SF35 - FAMILY NOT NAMED // TRANSCRIPTION FACTOR-RELATED Chr07 - View
Citrullus lanatus ClCG05G020650 LIM transcription factor CG_Chr05 + View
Citrullus lanatus ClCG02G007060 Transcription factor LIM CG_Chr02 + View
Citrullus lanatus ClCG08G016530 LIM domain protein LIM-2 CG_Chr08 + View
Cucumis melo MELO3C018524.2 LIM domain-containing protein chr01 + View
Cucumis melo MELO3C010801.2 LIM domain-containing protein chr03 + View
Cucumis melo MELO3C016823.2 LIM domain-containing protein chr07 - View
Corchorus olitorius COL.COLO4_28498 Zinc finger%2C LIM-type AWUE01019949.1 - View
Carica papaya Cpa.g.sc142.32 supercontig_142 - View
Chenopodium quinoa AUR62037417 WLIM1: LIM domain-containing protein WLIM1 C_Quinoa_Scaffold_3097 - View
Capsella rubella Carub.0001s0961 PTHR24206:SF35 - TRANSCRIPTION FACTOR-RELATED scaffold_1 - View
Cucumis sativus L. CsaV3_7G007780 LIM domain-containing protein chr7 - View
Cucumis sativus L. CsaV3_2G026080 LIM domain-containing protein chr2 - View
Cucumis sativus L. CsaV3_4G035090 LIM domain-containing protein chr4 + View
Daucus carota DCAR_020052 hypothetical protein DCARv2_Chr6 - View
Davidia involucrata Dinv44951 GWHABJS00000002 - View
Davidia involucrata Dinv15811 GWHABJS00000005 + View
Davidia involucrata Dinv39218 GWHABJS00000011 - View
Durio zibethinus Duzib041G0553 NW_019167826.1 + View
Durio zibethinus Duzib052G0307 NW_019167849.1 - View
Durio zibethinus Duzib132G0912 NW_019167915.1 + View
Durio zibethinus Duzib093G0095 NW_019167937.1 - View
Durio zibethinus Duzib248G0008 NW_019168048.1 - View
Erigeron canadensis ECA234G2826 Conyza_canadensis_scaffold:4 - View
Erigeron canadensis ECA247G0762 Conyza_canadensis_scaffold:7 - View
Eucalyptus grandis Eucgr.F02243 Chr06 + View
Eucalyptus grandis Eucgr.F00087 Chr06 - View
Erythranthe guttata Migut.C00483 scaffold_3 - View
Erythranthe guttata Migut.N02785 scaffold_14 + View
Erythranthe guttata Migut.N01130 scaffold_14 - View
Fragaria x ananassa FAN20G0536 PTHR24206:SF35 - TRANSCRIPTION FACTOR-RELATED Fvb2-3 + View
Fragaria x ananassa FAN27G0891 PTHR24206//PTHR24206:SF35 - FAMILY NOT NAMED // TRANSCRIPTION FACTOR-RELATED Fvb2-1 - View
Fragaria x ananassa FAN24G3297 PTHR24206:SF35 - TRANSCRIPTION FACTOR-RELATED Fvb2-2 + View
Fragaria x ananassa FAN15G0106 PTHR24206:SF35 - TRANSCRIPTION FACTOR-RELATED Fvb2-4 - View
Fragaria vesca FvH4_2g32970 PTHR24206//PTHR24206:SF35 - FAMILY NOT NAMED // TRANSCRIPTION FACTOR-RELATED Fvb2 - View
Gossypium hirsutum Gohir.D06G021500 PTHR24206:SF35 - TRANSCRIPTION FACTOR-RELATED D06 + View
Gossypium hirsutum Gohir.A03G182100 K09377 - cysteine and glycine-rich protein (CSRP) A03 - View
Gossypium hirsutum Gohir.A06G024400 PTHR24206:SF35 - TRANSCRIPTION FACTOR-RELATED A06 + View
Gossypium hirsutum Gohir.D02G203800 K09377 - cysteine and glycine-rich protein (CSRP) D02 - View
Glycine max Glyma.06G047000 PTHR24206:SF35 - TRANSCRIPTION FACTOR-RELATED Gm06 + View
Glycine max Glyma.04G046200 PTHR24206:SF35 - TRANSCRIPTION FACTOR-RELATED Gm04 + View
Glycine max Glyma.14G089024 PTHR24206:SF35 - TRANSCRIPTION FACTOR-RELATED Gm14 + View
Glycine max Glyma.17G234700 PTHR24206:SF35 - TRANSCRIPTION FACTOR-RELATED Gm17 - View
Gossypium raimondii Gorai.010G026100 Chr10 + View
Gossypium raimondii Gorai.005G230900 Chr05 - View
Hydrangea macrophylla Hma1.2p1_0819F.1_g223640 Hma1.2p1_0819F.1 - View
Lupinus albus Lalb_Chr08g0245561 PTHR24206//PTHR24206:SF35 - FAMILY NOT NAMED // TRANSCRIPTION FACTOR-RELATED Lalb_Chr08 + View
Lupinus albus Lalb_Chr22g0355681 PTHR24206//PTHR24206:SF35 - FAMILY NOT NAMED // TRANSCRIPTION FACTOR-RELATED Lalb_Chr22 + View
Lupinus albus Lalb_Chr21g0308021 PF00412 - LIM domain (LIM) Lalb_Chr21 - View
Lupinus albus Lalb_Chr14g0368161 PTHR24206:SF35 - TRANSCRIPTION FACTOR-RELATED Lalb_Chr14 - View
Lupinus albus Lalb_Chr02g0144961 K09377 - cysteine and glycine-rich protein (CSRP) Lalb_Chr02 - View
Lotus japonicus Lj5g0021325 K09377 - cysteine and glycine-rich protein (CSRP) chr5 + View
Lotus japonicus Lj1g0023505 PTHR24206//PTHR24206:SF35 - FAMILY NOT NAMED // TRANSCRIPTION FACTOR-RELATED chr1 - View
Lotus japonicus Lj5g0005515 PTHR24206//PTHR24206:SF35 - FAMILY NOT NAMED // TRANSCRIPTION FACTOR-RELATED chr5 - View
Lonicera japonica Lj4A757T33 GWHAAZE00000004 - View
Lonicera japonica Lj5C219T5 GWHAAZE00000005 + View
Lactuca sativa Lsat_1_v5_gn_1_1361 PTHR24206:SF35 - TRANSCRIPTION FACTOR-RELATED Lsat_1_v8_lg_1 + View
Malus domestica MD08G1081300 GATA type zinc finger transcription factor family protein Chr08 - View
Malus domestica MD15G1068200 GATA type zinc finger transcription factor family protein Chr15 - View
Malus domestica MD05G1101500 GATA type zinc finger transcription factor family protein Chr05 + View
Manihot esculenta Manes.18G047000 Chromosome18 + View
Medicago truncatula Medtr1g106100 GATA type zinc finger transcription factor family protein chr1 - View
Medicago truncatula Medtr1g017950 GATA type zinc finger transcription factor family protein chr1 - View
Nicotiana tabacum Nitab4.5_0003725g0090 Zinc finger, LIM-type Nitab4.5_0003725 - View
Nicotiana tabacum Nitab4.5_0000497g0200 Zinc finger, LIM-type Nitab4.5_0000497 - View
Olea europaea Oeu053624.1 scaffold65 - View
Petunia axillaris Peaxi162Scf00160g00516 GATA type zinc finger transcription factor family protein Peaxi162Scf00160 + View
Petunia axillaris Peaxi162Scf00152g00431 GATA type zinc finger transcription factor family protein Peaxi162Scf00152 + View
Petunia axillaris Peaxi162Scf00081g02226 GATA type zinc finger transcription factor family protein Peaxi162Scf00081 + View
Punica granatum PGR031G0646 NC_045127.1 - View
Punica granatum PGR142G2546 NC_045128.1 + View
Prunus persica Prupe.1G422200 Pp01 - View
Pisum sativum Psat6g018080 LIM domain chr6LG2 - View
Papaver somniferum PSO675G8883 NC_039358.1 + View
Papaver somniferum PSO541G0238 NC_039363.1 - View
Populus trichocarpa Potri.002G118000 PTHR24206:SF35 - TRANSCRIPTION FACTOR-RELATED Chr02 - View
Populus trichocarpa Potri.014G015600 PTHR24206:SF35 - TRANSCRIPTION FACTOR-RELATED Chr14 - View
Populus trichocarpa Potri.001G292900 K09377 - cysteine and glycine-rich protein (CSRP) Chr01 - View
Populus trichocarpa Potri.009G087200 K09377 - cysteine and glycine-rich protein (CSRP) Chr09 - View
Phaseolus vulgaris Phvul.009G072200 PTHR24206:SF35 - TRANSCRIPTION FACTOR-RELATED Chr09 + View
Phaseolus vulgaris Phvul.001G028200 Chr01 + View
Phaseolus vulgaris Phvul.007G046100 K09377 - cysteine and glycine-rich protein (CSRP) Chr07 + View
Quercus lobata QL12p038173 12 + View
Rosa chinensis RcHm_v2.0_Chr6g0309731 RcHm_v2.0_Chr6 + View
Rhododendron simsii Rhsim07G0219500 chr07 - View
Striga asiatica SGA_v2.0_scaffold152G36806 scaffold152 + View
Salvia bowleyana SalBow7G4490 GWHASIU00000005 + View
Salix brachista Sabra16G0182500 GWHAAZH00000016 - View
Salix brachista Sabra02G0092700 GWHAAZH00000002 - View
Salix brachista Sabra14G0009400 GWHAAZH00000014 - View
Simmondsia chinensis Sc15g0005650 GWHAASQ00000015 - View
Sechium edule Sed0023989 LG01 + View
Sechium edule Sed0003112 LG10 - View
Solanum lycopersicum Solyc04g077780.3 LIM domain-containing protein (AHRD V3.3 *** A0A1Q3ALK2_CEPFO) SL4.0ch04 - View
Solanum lycopersicum Solyc12g088320.2 LIM domain-containing protein (AHRD V3.3 *** A0A1Q3ALK2_CEPFO) SL4.0ch12 - View
Schrenkiella parvula Sp1g08820 PTHR24206:SF35 - TRANSCRIPTION FACTOR-RELATED ch1-1 - View
Solanum pennellii Sopen12g030320 WLIM1 | FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding | INVOLVED IN: biological_process unknown | LOCATED IN: plasma membrane | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type | BEST Arabidopsis thaliana protein match is: GATA type zinc finger transcription factor family protein Spenn-ch12 - View
Solanum pennellii Sopen04g031390 WLIM1 | FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding | INVOLVED IN: biological_process unknown | LOCATED IN: plasma membrane | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type | BEST Arabidopsis thaliana protein match is: GATA type zinc finger transcription factor family protein Spenn-ch04 - View
Solanum tuberosum PGSC0003DMG400011558 Transcription factor LIM ST4.03ch12 - View
Solanum tuberosum PGSC0003DMG400010609 Transcription factor LIM ST4.03ch04 - View
Selenicereus undatus Hund05296 Scaffold_19641 - View
Trochodendron aralioides TAR625G0104 group4 + View
Trochodendron aralioides TAR381G1289 group11 + View
Trochodendron aralioides TAR376G0251 group14 - View
Theobroma cacao Thecc.08G088100 GATA type zinc finger transcription factor family protein Chromosome_8 - View
Tarenaya hassleriana THA.LOC104816758 LIM domain-containing protein WLIM1 NW_010965869.1 + View
Trifolium pratense TPR.G33679 Tp57577_TGAC_v2_LG7 + View
Trifolium pratense TPR.G13118 Tp57577_TGAC_v2_LG1 - View
Tripterygium wilfordii TWI56G1354 NC_052242.1 - View
Tripterygium wilfordii TWI12G0931 NC_052243.1 - View
Tripterygium wilfordii TWI12G0665 NC_052243.1 + View
Utricularia gibba unitig_578.g16151 unitig_578 + View
Utricularia gibba unitig_8.g4876 unitig_8 - View
Vaccinium macrocarpon vmacro22050 Similar to WLIM1: LIM domain-containing protein WLIM1 (Arabidopsis thaliana OX%3D3702) scaffold00290_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo0647G2325 CM024073.1 + View
Vigna mungo VMungo1309G0509 CM024072.1 - View
Vitis vinifera GSVIVG01037819001 chr3 + View
Vitis vinifera GSVIVG01009338001 chr18 - View