Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0030750 PREDICTED: RNA-binding protein Nova-1 isoform X2 [Vitis vinifera] Chr1 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG11G5300 LG-11 - View
Acer truncatum Atru.chr12.903 chr12 - View
Actinidia chinensis Actinidia38891 Lachesis_group17 + View
Actinidia chinensis Actinidia34789 Lachesis_group6 - View
Arabidopsis lyrata AL6G14070 scaffold_6 - View
Aquilegia oxysepala Aqoxy1G01069 CHR01 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.68AZQV K14944 - RNA-binding protein Nova (NOVA) arahy.Tifrunner.gnm1.Arahy.09 - View
Arabidopsis thaliana AT5G04430 binding to TOMV RNA 1L (long form) Gene model AT5G04430.1 produces active protein. (BTS1S). Binds to ToMV genomic RNA and prevents viral multiplication. BINDING TO TOMV RNA 1S (SHORT FORM) (BTR1S)%3B FUNCTIONS IN: single-stranded RNA binding%2C nucleic acid binding%3B INVOLVED IN: RNA splicing%2C regulation of viral protein levels in host cell%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: K Homology%2C type 1%2C subgroup (InterPro:IPR018111)%2C K Homology (InterPro:IPR004087)%2C K Homology%2C type 1 (InterPro:IPR004088)%3B BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT4G10070.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). binding to TOMV RNA 1L (long form) (BTR1L)%3B CONTAINS InterPro DOMAIN/s: K Homology%2C type 1%2C subgroup (InterPro:IPR018111)%2C K Homology (InterPro:IPR004087)%2C K Homology%2C type 1 (InterPro:IPR004088)%3B BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT5G15270.1)%3B Has 5613 Blast hits to 2614 proteins in 213 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 3980%3B Fungi - 530%3B Plants - 787%3B Viruses - 0%3B Other Eukaryotes - 308 (source: NCBI BLink). Chr5 - View
Brassica napus A03p01680 A03 - View
Cannabis sativa CANSAT56G2777 NC_044371.1 - View
Cicer arietinum L. Ca_10441_v3 Ca_LG4_v3 - View
Corylus avellana Haze_16775 Similar to BTR1: Protein BTR1 (Arabidopsis thaliana OX%3D3702) 11 - View
Citrus clementina Ciclev10032050m.g scaffold_4 - View
Carpinus fangiana Cfa001777 Cfa01 + View
Cardamine hirsuta CARHR208830 Poly(Rc)-binding protein 2 Chr6 + View
Carya illinoinensis CiPaw.02G170100 K14944 - RNA-binding protein Nova (NOVA) Chr02 + View
Carya illinoinensis CiPaw.01G265300 K14944 - RNA-binding protein Nova (NOVA) Chr01 + View
Citrullus lanatus ClCG05G021420 RNA-binding protein Nova-1 CG_Chr05 - View
Carica papaya Cpa.g.sc53.166 supercontig_53 - View
Davidia involucrata Dinv36360 GWHABJS00000009 - View
Davidia involucrata Dinv31262 GWHABJS00000004 + View
Durio zibethinus Duzib114G0852 NW_019167926.1 - View
Fragaria x ananassa FAN03G1234 K14944 - RNA-binding protein Nova (NOVA) Fvb7-3 - View
Fragaria x ananassa FAN06G2771 K14944 - RNA-binding protein Nova (NOVA) Fvb7-2 - View
Fragaria x ananassa FAN01G0566 K14944 - RNA-binding protein Nova (NOVA) Fvb7-4 - View
Fragaria vesca FvH4_7g06600 K14944 - RNA-binding protein Nova (NOVA) Fvb7 - View
Gossypium hirsutum Gohir.D10G208300 K14944 - RNA-binding protein Nova (NOVA) D10 + View
Glycine max Glyma.20G191700 K14944 - RNA-binding protein Nova (NOVA) Gm20 + View
Glycine max Glyma.10G198300 K14944 - RNA-binding protein Nova (NOVA) Gm10 - View
Gossypium raimondii Gorai.011G234000 Chr11 + View
Helianthus annuus HanXRQChr08g0218311 Probable binding to TOMV RNA 1L (long form) HanXRQChr08 + View
Lupinus albus Lalb_Chr06g0170031 K14944 - RNA-binding protein Nova (NOVA) Lalb_Chr06 - View
Lupinus albus Lalb_Chr02g0151111 K14944 - RNA-binding protein Nova (NOVA) Lalb_Chr02 - View
Malus domestica MD07G1074100 binding to TOMV RNA 1L (long form) Chr07 - View
Medicago truncatula Medtr1g090773 binding to TOMV RNA 1L (long form) protein chr1 - View
Nelumbo nucifera Nn6g35202 chr6 + View
Punica granatum PGR142G3968 NC_045128.1 + View
Pisum sativum Psat6g173360 KH domain chr6LG2 - View
Papaver somniferum PSO339G4614 NC_039366.1 - View
Papaver somniferum PSO339G2738 NC_039366.1 + View
Populus trichocarpa Potri.010G230500 K14944 - RNA-binding protein Nova (NOVA) Chr10 - View
Quercus lobata QL08p053096 8 + View
Rhododendron simsii Rhsim09G0145400 chr09 + View
Salvia bowleyana SalBow4G0167 GWHASIU00000008 - View
Salvia bowleyana SalBow6G4419 GWHASIU00000002 + View
Salix brachista Sabra10G0178800 GWHAAZH00000010 - View
Sechium edule Sed0013139 LG06 + View
Solanum lycopersicum Solyc11g007940.2 Protein BTR1 (AHRD V3.3 *** A0A2G2VF13_CAPBA) SL4.0ch11 + View
Schrenkiella parvula Sp6g38310 K14944 - RNA-binding protein Nova (NOVA) ch6-6 + View
Solanum pennellii Sopen11g003810 Gene model AT5G04430.1 produces active protein. (BTS1S). Binds to ToMV genomic RNA and prevents viral multiplication. | binding to TOMV RNA 1L (long form) (BTR1L) | CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup , K Homology , K Homology, type 1 | BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein Spenn-ch11 + View
Solanum tuberosum PGSC0003DMG400027335 Far upstream element-binding protein ST4.03ch11 - View
Trochodendron aralioides TAR633G1158 group2 + View
Trochodendron aralioides TAR623G1080 group7 + View
Theobroma cacao Thecc.10G089500 Binding to TOMV RNA 1L (long form) Chromosome_10 - View
Tarenaya hassleriana THA.LOC104823197 protein BTR1 isoform X1 NW_010966881.1 + View
Trifolium pratense TPR.G37741 Tp57577_TGAC_v2_LG1 - View
Tripterygium wilfordii TWI15G0156 NC_052247.1 + View
Tripterygium wilfordii TWI38G0253 NC_052252.1 + View
Tripterygium wilfordii TWI63G1099 NC_052240.1 + View
Vaccinium macrocarpon vmacro10262 Similar to BTR1: Protein BTR1 (Arabidopsis thaliana OX%3D3702) chr8_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo0720G0843 CM024071.1 - View
Vitis vinifera GSVIVG01016165001 chr13 - View