Gene: AT5G04430

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G04430
  • Transcript Identifier AT5G04430.2
  • Gene Type Coding gene
  • Location Chr5 : 1250602-1253523 : negative

Gene Family Information

  • ID HOM05D003445
  • #Genes/#Species 198/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G04430.2
  • symbol BTR1L
  • Alias BTR1S,BINDING TO TOMV RNA 1S (SHORT FORM),BTR1,BINDING TO TOMV RNA 1
  • uniprot Q9LZ82

Descriptions

  • Description binding to TOMV RNA 1L (long form)
  • Computational description BINDING TO TOMV RNA 1S (SHORT FORM) (BTR1S); FUNCTIONS IN: single-stranded RNA binding, nucleic acid binding; INVOLVED IN: RNA splicing, regulation of viral protein levels in host cell; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT4G10070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
  • Computational description binding to TOMV RNA 1L (long form) (BTR1L); CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT5G15270.1); Has 5613 Blast hits to 2614 proteins in 213 species: Archae - 0; Bacteria - 8; Metazoa - 3980; Fungi - 530; Plants - 787; Viruses - 0; Other Eukaryotes - 308 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010468
IBA
Gene Ontologyregulation of gene expression1
GO:0046719
IMP
Gene Ontologyregulation by virus of viral protein levels in host cell2
GO:0008380
NAS
Gene OntologyRNA splicing3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
IDA, HDA
IBA
Gene OntologymRNA binding1 4 5
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0005515
IPI
Gene Ontologyprotein binding6
GO:0003727
IPI
Gene Ontologysingle-stranded RNA binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
ISM, IBA
Gene Ontologycytoplasm1
GO:0005634
ISM
Gene Ontologynucleus
GO:0005886
HDA
Gene Ontologyplasma membrane7
GO:0005829
HDA
Gene Ontologycytosol8

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR004087 K Homology domain
IPR036612 K Homology domain, type 1 superfamily
IPR004088 K Homology domain, type 1
Mapman id Description
26.11.3.2 External stimuli response.virus.virus infection.resistance factor (BTR1)