Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
A05p45090 A05 - View
C09p75590 C09 - View
C02p07850 C02 + View
A03p07260 A03 + View
C09p61480 C09 - View
A02p03130 A02 + View
A10p23340 A10 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG5G12740 LG-5 - View
Aethionema arabicum Aa31LG11G13960 LG-11 - View
Actinidia chinensis Actinidia17597 Lachesis_group21 + View
Actinidia chinensis Actinidia18071 Lachesis_group11 + View
Arabidopsis lyrata AL3G11460 scaffold_3 - View
Arabidopsis lyrata AL6G26480 scaffold_6 + View
Avicennia marina MSTRG.3369 ScioBoG_102836_HRSCAF_103072 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.XMS8ZM PF04833 - COBRA-like protein (COBRA) arahy.Tifrunner.gnm1.Arahy.01 - View
Arabidopsis thaliana AT5G15630 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family Encodes a member of the COBRA family%2C similar to phytochelatin synthetase. Involved in secondary cell wall biosynthesis. Mutants make smaller plants with reduced levels of cellulose and cell wall sugars. IRREGULAR XYLEM 6 (IRX6)%3B INVOLVED IN: secondary cell wall biogenesis%3B LOCATED IN: plasma membrane%2C anchored to membrane%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored%2C plant (InterPro:IPR006918)%2C COBRA-like (InterPro:IPR017391)%3B BEST Arabidopsis thaliana protein match is: COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (TAIR:AT5G60920.1)%3B Has 379 Blast hits to 368 proteins in 30 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 379%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink). Chr5 + View
Arabidopsis thaliana AT3G02210 COBRA-like protein 1 precursor COBRA-like protein 1 precursor (COBL1)%3B CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored%2C plant (InterPro:IPR006918)%2C COBRA-like (InterPro:IPR017391)%3B BEST Arabidopsis thaliana protein match is: COBRA-like protein 2 precursor (TAIR:AT3G29810.1)%3B Has 380 Blast hits to 369 proteins in 30 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 380%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink). Chr3 - View
Brassica carinata BcaB01g05036 ChrB01 - View
Brassica carinata BcaC04g18946 ChrC04 - View
Brassica carinata BcaC05g30333 ChrC05 - View
Brassica oleracea BolC2t06711H C2 + View
Brassica oleracea BolC3t13340H C3 + View
Brassica rapa BraA10t44402Z A10 - View
Brassica rapa BraA05t23152Z A05 + View
Brassica rapa BraA02t05283Z A02 + View
Cardamine hirsuta CARHR197690 COBRA-like protein Chr6 - View
Cardamine hirsuta CARHR076180 Protein COBRA, putative Chr3 - View
Capsella rubella Carub.0006s1378 PTHR31673//PTHR31673:SF2 - FAMILY NOT NAMED // COBRA-LIKE PROTEIN 4 scaffold_6 + View
Capsella rubella Carub.0003s0133 PF04833 - COBRA-like protein (COBRA) scaffold_3 - View
Davidia involucrata Dinv33853 GWHABJS00000014 + View
Erigeron canadensis ECA238G1822 Conyza_canadensis_scaffold:6 - View
Eutrema salsugineum Thhalv10020716m.g PF04833 - COBRA-like protein (COBRA) scaffold_13 + View
Eutrema salsugineum Thhalv10013604m.g PTHR31673:SF2 - COBRA-LIKE PROTEIN 4 scaffold_2 + View
Fragaria x ananassa FAN02G0367 PF04833 - COBRA-like protein (COBRA) Fvb6-4 - View
Gossypium hirsutum Gohir.A11G159360 PF04833 - COBRA-like protein (COBRA) A11 + View
Gossypium raimondii Gorai.007G176300 Chr07 + View
Manihot esculenta Manes.02G058100 Chromosome02 + View
Nicotiana tabacum Nitab4.5_0000212g0310 COBRA, plant Nitab4.5_0000212 + View
Olea europaea Oeu033403.1 chr2 - View
Populus trichocarpa Potri.017G098600 PTHR31673:SF3 - COBRA-LIKE EXTRACELLULAR GLYCOSYL-PHOSPHATIDYL INOSITOL-ANCHORED FAMILY PROTEIN-RELATED Chr17 + View
Rhododendron simsii Rhsim08G0076100 chr08 + View
Schrenkiella parvula Sp3g01280 PF04833 - COBRA-like protein (COBRA) ch3-1 - View
Schrenkiella parvula Sp6g28480 PTHR31673:SF2 - COBRA-LIKE PROTEIN 4 ch6-6 - View
Solanum pennellii Sopen02g015980 Encodes a glycosylphosphatidylinositol-anchored protein localized primarily in the plasma membrane of the longitudinal sides of root cells. Necessary for oriented cell expansion in Arabidopsis. Cob mutants have abnormal roots that expand radially rather than longitudinally under certain growth conditions. | COBRA (COB) | FUNCTIONS IN: molecular_function unknown | INVOLVED IN: response to salt stress, multidimensional cell growth, cellulose microfibril organization | LOCATED IN: in 6 components | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant , COBRA-like | BEST Arabidopsis thaliana protein match is: COBRA-like protein 1 precursor Spenn-ch02 - View
Tarenaya hassleriana THA.LOC104820989 COBRA-like protein 4 NW_010966372.1 - View
Tarenaya hassleriana THA.LOC104802979 COBRA-like protein 1 NW_010970490.1 - View
Tarenaya hassleriana THA.LOC104805521 COBRA-like protein 2 NW_010961290.1 + View
Vaccinium macrocarpon vmacro18136 Similar to BC1L6: COBRA-like protein 1 (Oryza sativa subsp. japonica OX%3D39947) chr3_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro05622 Similar to COB: Protein COBRA (Arabidopsis thaliana OX%3D3702) chr12_Vaccinium_macrocarpon_Stevens_v1 + View
Vitis vinifera GSVIVG01036565001 chr14 + View