Gene: AT5G15630
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G15630
- Transcript Identifier AT5G15630.1
- Gene Type Coding gene
- Location Chr5 : 5084842-5086545 : positive
Gene Family Information
- ID HOM05D000600
- #Genes/#Species 940/96
- Phylogenetic origin
- ID ORTHO05D000432
- #Genes/#Species 939/97
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT5G15630.1
- symbol IRX6
- Alias COBL4,COBRA-LIKE4
- full_name IRREGULAR XYLEM 6
- uniprot Q9LFW3
Descriptions
- Description COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
- Computational description IRREGULAR XYLEM 6 (IRX6); INVOLVED IN: secondary cell wall biogenesis; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918), COBRA-like (InterPro:IPR017391); BEST Arabidopsis thaliana protein match is: COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (TAIR:AT5G60920.1); Has 379 Blast hits to 368 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 379; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0010215 | IEA | Gene Ontology | cellulose microfibril organization | |
| GO:0010215 | IEA | InterPro | cellulose microfibril organization | |
| GO:0009834 | IMP | Gene Ontology | plant-type secondary cell wall biogenesis | 1 |
| GO:0052324 | IBA | Gene Ontology | plant-type cell wall cellulose biosynthetic process | 2 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005886 | IEA | GOA Database | plasma membrane | |
| GO:0005886 | IDA ISM | Gene Ontology | plasma membrane | 3 |
| GO:0031225 | TAS, IEA | Gene Ontology | anchored component of membrane | 4 |
| GO:0031225 | IEA | InterPro | anchored component of membrane | |
| GO:0000325 | HDA | Gene Ontology | plant-type vacuole | 5 |
| GO:0046658 | IBA | Gene Ontology | anchored component of plasma membrane | 2 |
| GO:0005774 | IDA | GOA Database | vacuolar membrane | |
| GO:0016020 | IEA | GOA Database | membrane |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR006918 | COBRA, plant |
| Mapman id | Description |
|---|---|
| 21.1.2.2 | Cell wall organisation.cellulose.cellulose-hemicellulose network assembly.regulatory protein (COB) |