Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
A02p03040 A02 - View
C09p61700 C09 + View
A10p23470 A10 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG11G14130 LG-11 + View
Acer truncatum Atru.chr8.394 chr8 - View
Actinidia chinensis Actinidia18999 Lachesis_group9 + View
Actinidia chinensis Actinidia07825 Lachesis_group4 - View
Arabidopsis lyrata AL6G26300 scaffold_6 - View
Avicennia marina MSTRG.3346 ScioBoG_102836_HRSCAF_103072 - View
Avicennia marina MSTRG.15457 ScioBoG_19538_HRSCAF_19626 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.H2NYVA K03695 - ATP-dependent Clp protease ATP-binding subunit ClpB (clpB) arahy.Tifrunner.gnm1.Arahy.20 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.A30NGG K03695 - ATP-dependent Clp protease ATP-binding subunit ClpB (clpB) arahy.Tifrunner.gnm1.Arahy.10 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.38YHDK PTHR11638//PTHR11638:SF116 - ATP-DEPENDENT CLP PROTEASE // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.01 - View
Arabidopsis thaliana AT5G15450 casein lytic proteinase B3 Encodes a chloroplast-targeted Hsp101 homologue. Functions as a molecular chaperone involved in plastid differentiation mediating internal thylakoid membrane formation and conferring thermotolerance to chloroplasts during heat stress. APG6 is constitutively expressed in the root tips%2C the organ boundary region%2C the reproductive tissues of mature plants where plastids exist as proplastids%2C and slightly in the stems and leaves. APG6 expression is upregulated in response to heat shock in various organs%2C but not in response to other abiotic stresses. Apg6 mutants have a pale-green phenotype. casein lytic proteinase B3 (CLPB3)%3B FUNCTIONS IN: nucleoside-triphosphatase activity%2C ATPase activity%2C nucleotide binding%2C ATP binding%3B INVOLVED IN: chloroplast organization%2C response to heat%3B LOCATED IN: plastid stroma%2C chloroplast%2C chloroplast stroma%3B EXPRESSED IN: 28 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Clp ATPase%2C C-terminal (InterPro:IPR019489)%2C ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ATPase%2C AAA-2 (InterPro:IPR013093)%2C ATPase%2C AAA-type%2C core (InterPro:IPR003959)%2C Chaperonin clpA/B (InterPro:IPR001270)%2C Chaperonin ClpB (InterPro:IPR017730)%2C Chaperonin ClpA/B%2C conserved site (InterPro:IPR018368)%2C Clp%2C N-terminal (InterPro:IPR004176)%3B BEST Arabidopsis thaliana protein match is: casein lytic proteinase B4 (TAIR:AT2G25140.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). Chr5 - View
Brassica carinata BcaC03g13412 ChrC03 + View
Brassica carinata BcaNung03309 Contig1141 + View
Brassica oleracea BolC9t59009H C9 + View
Brassica oleracea BolC2t06703H C2 - View
Brassica rapa BraA10t44414Z A10 + View
Brassica rapa BraA02t05274Z A02 - View
Camellia sinensis var. sinensis CSS0041279 PREDICTED: chaperone protein ClpB3, chloroplastic-like [Glycine max] Chr2 - View
Camellia sinensis var. sinensis CSS0002788 unnamed protein product [Coffea canephora] Chr1 + View
Cannabis sativa CANSAT64G1936 NC_044379.1 + View
Coffea canephora Cc07_g04080 Chaperone protein ClpB3, chloroplastic chr7 + View
Citrus clementina Ciclev10010991m.g scaffold_6 + View
Carpinus fangiana Cfa007627 Cfa03 - View
Cardamine hirsuta CARHR197870 Chaperone clpb, putative Chr6 + View
Carya illinoinensis CiPaw.03G091100 PTHR11638:SF121 - CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC Chr03 + View
Carya illinoinensis CiPaw.04G058100 PTHR11638//PTHR11638:SF121 - ATP-DEPENDENT CLP PROTEASE // CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC Chr04 + View
Carica papaya Cpa.g.sc14.150 supercontig_14 - View
Capsella rubella Carub.0006s1361 PTHR11638//PTHR11638:SF121 - ATP-DEPENDENT CLP PROTEASE // CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC scaffold_6 - View
Daucus carota DCAR_011054 hypothetical protein DCARv2_Chr3 + View
Davidia involucrata Dinv11482 GWHABJS00000012 + View
Davidia involucrata Dinv33813 GWHABJS00000014 - View
Durio zibethinus Duzib264G1062 NW_019167960.1 - View
Eucalyptus grandis Eucgr.K02521 Chr11 + View
Eucalyptus grandis Eucgr.I01982 Chr09 + View
Eucalyptus grandis Eucgr.B00581 Chr02 + View
Erythranthe guttata Migut.K01291 scaffold_11 + View
Eutrema salsugineum Thhalv10012593m.g PTHR11638:SF121 - CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC scaffold_2 - View
Fragaria x ananassa FAN09G0773 PTHR11638:SF121 - CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC Fvb6-2 - View
Fragaria x ananassa FAN14G4949 PTHR11638:SF121 - CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC Fvb6-1 - View
Fragaria x ananassa FAN02G4213 PTHR11638//PTHR11638:SF121 - ATP-DEPENDENT CLP PROTEASE // CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC Fvb6-4 + View
Fragaria x ananassa FAN05G5010 PTHR11638//PTHR11638:SF121 - ATP-DEPENDENT CLP PROTEASE // CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC Fvb6-3 - View
Fragaria vesca FvH4_6g47410 PTHR11638//PTHR11638:SF121 - ATP-DEPENDENT CLP PROTEASE // CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC Fvb6 + View
Gossypium hirsutum Gohir.D03G096200 PF02861//PF07728//PF10431 - Clp amino terminal domain, pathogenicity island component (Clp_N) // AAA domain (dynein-related subfamily) (AAA_5) // C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) D03 + View
Gossypium hirsutum Gohir.A03G069700 PF00004//PF02861//PF10431 - ATPase family associated with various cellular activities (AAA) (AAA) // Clp amino terminal domain, pathogenicity island component (Clp_N) // C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) A03 + View
Gossypium hirsutum Gohir.A07G069000 K03695 - ATP-dependent Clp protease ATP-binding subunit ClpB (clpB) A07 - View
Gossypium hirsutum Gohir.D09G010200 PTHR11638//PTHR11638:SF121 - ATP-DEPENDENT CLP PROTEASE // CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC D09 + View
Gossypium hirsutum Gohir.A09G011200 PTHR11638//PTHR11638:SF121 - ATP-DEPENDENT CLP PROTEASE // CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC A09 + View
Glycine max Glyma.19G027900 PTHR11638//PTHR11638:SF121 - ATP-DEPENDENT CLP PROTEASE // CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC Gm19 - View
Glycine max Glyma.13G058600 PTHR11638//PTHR11638:SF121 - ATP-DEPENDENT CLP PROTEASE // CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC Gm13 + View
Gossypium raimondii Gorai.003G100900 Chr03 + View
Lupinus albus Lalb_Chr12g0197051 PTHR11638//PTHR11638:SF116 - ATP-DEPENDENT CLP PROTEASE // SUBFAMILY NOT NAMED Lalb_Chr12 + View
Lupinus albus Lalb_Chr02g0159021 PTHR11638//PTHR11638:SF121 - ATP-DEPENDENT CLP PROTEASE // CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC Lalb_Chr02 + View
Lotus japonicus Lj2g0013748 PTHR11638//PTHR11638:SF121 - ATP-DEPENDENT CLP PROTEASE // CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC chr2 + View
Lotus japonicus Lj1g0026685 PTHR11638:SF121 - CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC chr1 + View
Lonicera japonica Lj4C116G26 GWHAAZE00000004 - View
Lonicera japonica Lju41C6G5 GWHAAZE00000094 + View
Malus domestica MD06G1201200 heat shock protein 101 Chr06 + View
Manihot esculenta Manes.14G084950 Chromosome14 + View
Manihot esculenta Manes.02G051600 Chromosome02 - View
Manihot esculenta Manes.01G098600 Chromosome01 + View
Medicago truncatula Medtr6g013600 casein lytic proteinase B3 chr6 - View
Olea europaea Oeu062146.1 chr10 - View
Petunia axillaris Peaxi162Scf00166g00647 Chaperone protein ClpB 2 Peaxi162Scf00166 + View
Punica granatum PGR044G0818 NC_045134.1 - View
Prunus persica Prupe.3G258500 PTHR11638:SF121 - CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC Pp03 + View
Papaver somniferum PSO017G0822 NC_039362.1 - View
Papaver somniferum PSO478G0212 NC_039361.1 + View
Populus trichocarpa Potri.015G056900 PTHR11638//PTHR11638:SF116 - ATP-DEPENDENT CLP PROTEASE // SUBFAMILY NOT NAMED Chr15 - View
Populus trichocarpa Potri.017G090600 PTHR11638//PTHR11638:SF121 - ATP-DEPENDENT CLP PROTEASE // CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC Chr17 - View
Phaseolus vulgaris Phvul.008G035600 PTHR11638:SF121 - CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC Chr08 + View
Phaseolus vulgaris Phvul.004G034000 PTHR11638:SF121 - CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC Chr04 - View
Rosa chinensis RcHm_v2.0_Chr2g0166481 RcHm_v2.0_Chr2 + View
Rhododendron simsii Rhsim08G0073800 chr08 - View
Rhododendron simsii Rhsim10G0045100 chr10 + View
Salix brachista Sabra17G0079800 GWHAAZH00000017 - View
Solanum lycopersicum Solyc02g088610.4 LeHSP110/ClpB heat shock protein SL4.0ch02 - View
Schrenkiella parvula Sp6g28650 PTHR11638:SF121 - CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC ch6-6 + View
Solanum pennellii Sopen02g033340 Encodes a chloroplast-targeted Hsp101 homologue. Functions as a molecular chaperone involved in plastid differentiation mediating internal thylakoid membrane formation and conferring thermotolerance to chloroplasts during heat stress. APG6 is constitutively expressed in the root tips, the organ boundary region, the reproductive tissues of mature plants where plastids exist as proplastids, and slightly in the stems and leaves. APG6 expression is upregulated in response to heat shock in various organs, but not in response to other abiotic stresses. Apg6 mutants have a pale-green phenotype. | casein lytic proteinase B3 (CLPB3) | FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding | INVOLVED IN: chloroplast organization, response to heat | LOCATED IN: plastid stroma, chloroplast, chloroplast stroma | EXPRESSED IN: 28 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal , ATPase, AAA+ type, core , ATPase, AAA-2 , ATPase, AAA-type, core , Chaperonin clpA/B , Chaperonin ClpB , Chaperonin ClpA/B, conserved site , Clp, N-terminal | BEST Arabidopsis thaliana protein match is: casein lytic proteinase B4 Spenn-ch02 - View
Solanum pennellii Sopen03g034270 Encodes ClpB1, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family. Involved in refolding of proteins which form aggregates under heat stress. Also known as AtHsp101. AtHsp101 is a cytosolic heat shock protein required for acclimation to high temperature. | heat shock protein 101 (HSP101) | FUNCTIONS IN: protein binding, ATPase activity, ATP binding | INVOLVED IN: response to high light intensity, response to hydrogen peroxide, response to heat, protein unfolding | EXPRESSED IN: 12 plant structures | EXPRESSED DURING: 6 growth stages | CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal , ATPase, AAA+ type, core , ATPase, AAA-2 , ATPase, AAA-type, core , Chaperonin clpA/B , Chaperonin ClpA/B, conserved site , Clp, N-terminal | BEST Arabidopsis thaliana protein match is: casein lytic proteinase B2 Spenn-ch03 - View
Solanum tuberosum PGSC0003DMG400024644 101 kDa heat shock protein ST4.03ch03 - View
Solanum tuberosum PGSC0003DMG400001442 Heat shock protein ST4.03ch02 + View
Theobroma cacao Thecc.04G091400 Casein lytic proteinase B3 Chromosome_4 - View
Trifolium pratense TPR.G33426 Tp57577_TGAC_v2_LG6 + View
Tripterygium wilfordii TWI81G0052 NC_052251.1 - View
Tripterygium wilfordii TWI60G0948 NC_052246.1 - View
Tripterygium wilfordii TWI34G0878 NC_052235.1 + View
Utricularia gibba unitig_37.g12723 unitig_37 + View
Vaccinium macrocarpon vmacro18160 Similar to CLPB3: Chaperone protein ClpB3, chloroplastic (Arabidopsis thaliana OX%3D3702) chr3_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro05661 Similar to CLPB3: Chaperone protein ClpB3, chloroplastic (Arabidopsis thaliana OX%3D3702) chr12_Vaccinium_macrocarpon_Stevens_v1 + View
Vitis vinifera GSVIVG01011496001 chr14 - View