Gene: AT5G15450

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G15450
  • Transcript Identifier AT5G15450.1
  • Gene Type Coding gene
  • Location Chr5 : 5014399-5018255 : negative

Gene Family Information

  • ID HOM05D000422
  • #Genes/#Species 1214/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G15450.1
  • symbol CLPB3
  • Alias APG6,ALBINO AND PALE GREEN 6,AtCLPB3,CLPB-P,CASEIN LYTIC PROTEINASE B-P
  • uniprot Q9LF37

Descriptions

  • Description casein lytic proteinase B3
  • Computational description casein lytic proteinase B3 (CLPB3); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: chloroplast organization, response to heat; LOCATED IN: plastid stroma, chloroplast, chloroplast stroma; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpB (InterPro:IPR017730), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: casein lytic proteinase B4 (TAIR:AT2G25140.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042026
IEA
Gene Ontologyprotein refolding
GO:0042026
IEA
InterProprotein refolding
GO:0009408
IEA
GOA Databaseresponse to heat
GO:0009408
IEP
Gene Ontologyresponse to heat1
GO:0009408
IEA
InterProresponse to heat
GO:0034605
IBA
Gene Ontologycellular response to heat2
GO:0009658
IMP
Gene Ontologychloroplast organization1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016887
IBA
Gene OntologyATP hydrolysis activity2
GO:0016887
IEA
InterProATP hydrolysis activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0000166
IEA
GOA Databasenucleotide binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
IDA, HDA
Gene Ontologychloroplast1 3
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
ISM, IBA
Gene Ontologycytoplasm2
GO:0005737
IEA
InterProcytoplasm
GO:0009536
IEA
GOA Databaseplastid
GO:0009536
HDA
Gene Ontologyplastid4
GO:0009570
IDA
GOA Databasechloroplast stroma
GO:0009570
HDA
Gene Ontologychloroplast stroma5
GO:0009532
IDA
Gene Ontologyplastid stroma6

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR019489 Clp ATPase, C-terminal
IPR003959 ATPase, AAA-type, core
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR036628 Clp, N-terminal domain superfamily
IPR004176 Clp, repeat (R) domain
IPR041546 ClpA/ClpB, AAA lid domain
IPR017730 Chaperonin ClpB
IPR001270 ClpA/B family
IPR003593 AAA+ ATPase domain
Mapman id Description
26.4.2.4 External stimuli response.temperature.heat response.organellar chaperone (Clp-p/Clp-m)