Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT5G28490 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) Encodes a nuclear protein that mediates light regulation of seedling development in a phytochrome-dependent manner. LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 (LSH1)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT3G04510.1)%3B Has 311 Blast hits to 311 proteins in 18 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 14%3B Fungi - 0%3B Plants - 297%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink). Chr5 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG5G14950 LG-5 - View
Acer truncatum Atru.chr2.970 chr2 + View
Arabidopsis lyrata AL3G14520 scaffold_3 - View
Avicennia marina MSTRG.12531 ScioBoG_17730_HRSCAF_17811 - View
Amaranthus hybridus Ah.06g191830 AmaHy_arrow1_Scaffold_6 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.7VWF6Q PF04852 - Protein of unknown function (DUF640) (DUF640) arahy.Tifrunner.gnm1.Arahy.16 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.3M3KZ3 PF04852 - Protein of unknown function (DUF640) (DUF640) arahy.Tifrunner.gnm1.Arahy.06 - View
Brassica carinata BcaC05g30192 ChrC05 + View
Brassica carinata BcaC09g47796 ChrC09 + View
Brassica carinata BcaC01g04367 ChrC01 + View
Brassica carinata BcaNung02092 Contig729 - View
Brassica carinata BcaB04g21367 ChrB04 + View
Brassica carinata BcaC05g29936 ChrC05 + View
Brassica carinata BcaB04g19321 ChrB04 + View
Brassica napus C05p62740 C05 + View
Brassica napus A03p33660 A03 - View
Brassica napus A06p37900 A06 - View
Brassica napus BNapus_Darmor_BZH_scaffold_78p00850 BNapus_Darmor_BZH_scaffold_78 - View
Brassica napus C03p40850 C03 - View
Brassica napus A01p40860 A01 + View
Brassica napus A05p42960 A05 + View
Brassica napus C07p40340 C07 + View
Brassica oleracea BolC2t11845H C2 + View
Brassica oleracea BolC1t05744H C1 + View
Brassica oleracea BolC3t16356H C3 - View
Brassica oleracea BolC5t34927H C5 + View
Brassica oleracea BolC7t44568H C7 + View
Brassica rapa BraA06t26709Z A06 - View
Brassica rapa BraA01t03297Z A01 - View
Brassica rapa BraA01t04522Z A01 + View
Brassica rapa BraA05t23041Z A05 + View
Brassica rapa BraA03t12540Z A03 - View
Camellia sinensis var. sinensis CSS0036206 PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Vitis vinifera] Chr1 + View
Capsicum annuum CAN.G771.29 PGAv.1.6.scaffold771 + View
Cannabis sativa CANSAT54G0564 NC_044375.1 - View
Cicer arietinum L. Ca_10016_v3 Ca_LG4_v3 - View
Corylus avellana Haze_04436 Similar to LSH1: Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 (Arabidopsis thaliana OX%3D3702) 2 - View
Coffea canephora Cc02_g08880 Protein of unknown function (DUF640) chr2 + View
Citrus clementina Ciclev10022288m.g scaffold_3 - View
Carpinus fangiana Cfa006345 Cfa02 + View
Cardamine hirsuta CARHR185130 Protein of unknown function (DUF640) Chr6 - View
Cardamine hirsuta CARHR078700 Protein of unknown function (DUF640) Chr3 - View
Carya illinoinensis CiPaw.08G118200 PF04852 - Protein of unknown function (DUF640) (DUF640) Chr08 + View
Carya illinoinensis CiPaw.07G074200 PF04852 - Protein of unknown function (DUF640) (DUF640) Chr07 - View
Citrullus lanatus ClCG02G017040 Protein of unknown function (DUF640) LENGTH=190 CG_Chr02 + View
Cucumis melo MELO3C006417.2 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 chr06 - View
Cucumis melo MELO3C004422.2 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like chr05 + View
Capsella rubella Carub.0006s2573 PTHR31165//PTHR31165:SF13 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-RELATED scaffold_6 - View
Capsella rubella Carub.0003s0367 PTHR31165//PTHR31165:SF13 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-RELATED scaffold_3 - View
Cucumis sativus L. CsaV3_3G012030 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS like chr3 - View
Cucumis sativus L. CsaV3_2G003730 Light-dependent short hypocotyls protein chr2 - View
Daucus carota DCAR_002318 hypothetical protein DCARv2_Chr1 - View
Davidia involucrata Dinv29851 GWHABJS00000016 - View
Durio zibethinus Duzib177G0319 NW_019168004.1 - View
Durio zibethinus Duzib211G0016 NW_019168049.1 + View
Durio zibethinus Duzib106G1946 NW_019168492.1 + View
Durio zibethinus Duzib128G0347 NW_019168481.1 + View
Erigeron canadensis ECA236G4273 Conyza_canadensis_scaffold:3 - View
Eucalyptus grandis Eucgr.H04235 Chr08 - View
Eucalyptus grandis Eucgr.B02146 Chr02 + View
Erythranthe guttata Migut.N00276 scaffold_14 + View
Eutrema salsugineum Thhalv10004974m.g PTHR31165:SF13 - PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-RELATED scaffold_6 - View
Fragaria x ananassa FAN14G0668 PF04852 - Protein of unknown function (DUF640) (DUF640) Fvb6-1 + View
Fragaria x ananassa FAN05G1042 PTHR31165:SF13 - PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-RELATED Fvb6-3 + View
Fragaria x ananassa FAN05G4493 PTHR31165//PTHR31165:SF13 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-RELATED Fvb6-3 - View
Fragaria x ananassa FAN09G0810 PF04852 - Protein of unknown function (DUF640) (DUF640) Fvb6-2 + View
Fragaria x ananassa FAN02G3538 PF04852 - Protein of unknown function (DUF640) (DUF640) Fvb6-4 - View
Fragaria x ananassa FAN14G4745 PF04852 - Protein of unknown function (DUF640) (DUF640) Fvb6-1 + View
Fragaria vesca FvH4_6g01940 PF04852 - Protein of unknown function (DUF640) (DUF640) Fvb6 - View
Gossypium hirsutum Gohir.D11G258100 PTHR31165//PTHR31165:SF13 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-RELATED D11 - View
Gossypium hirsutum Gohir.A11G247700 PF04852 - Protein of unknown function (DUF640) (DUF640) A11 - View
Gossypium hirsutum Gohir.D08G254900 PTHR31165//PTHR31165:SF9 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 7-RELATED D08 - View
Gossypium hirsutum Gohir.A08G234500 PTHR31165//PTHR31165:SF9 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 7-RELATED A08 - View
Gossypium hirsutum Gohir.A13G167700 PF04852 - Protein of unknown function (DUF640) (DUF640) A13 - View
Glycine max Glyma.19G248300 PF04852 - Protein of unknown function (DUF640) (DUF640) Gm19 + View
Glycine max Glyma.03G250900 PF04852 - Protein of unknown function (DUF640) (DUF640) Gm03 + View
Glycine max Glyma.20G223100 PF04852 - Protein of unknown function (DUF640) (DUF640) Gm20 - View
Glycine max Glyma.10G166100 PF04852 - Protein of unknown function (DUF640) (DUF640) Gm10 + View
Gossypium raimondii Gorai.013G187500 Chr13 + View
Gossypium raimondii Gorai.007G276300 Chr07 - View
Lupinus albus Lalb_Chr18g0044031 PF04852 - Protein of unknown function (DUF640) (DUF640) Lalb_Chr18 + View
Lupinus albus Lalb_Chr06g0168281 PTHR31165//PTHR31165:SF13 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-RELATED Lalb_Chr06 + View
Lupinus albus Lalb_Chr02g0149091 PF04852 - Protein of unknown function (DUF640) (DUF640) Lalb_Chr02 + View
Lotus japonicus Lj5g0023611 PF04852 - Protein of unknown function (DUF640) (DUF640) chr5 - View
Lotus japonicus Lj1g0003613 PF04852 - Protein of unknown function (DUF640) (DUF640) chr1 - View
Lonicera japonica Lj2C41T7 GWHAAZE00000002 + View
Malus domestica MD04G1229700 Protein of unknown function (DUF640) Chr04 + View
Manihot esculenta Manes.08G139300 Chromosome08 + View
Manihot esculenta Manes.09G148200 Chromosome09 - View
Olea europaea Oeu059153.1 chr4 + View
Oryza sativa ssp. japonica Os02g0623400 Similar to G1-like protein. chr02 - View
Punica granatum PGR004G2033 NC_045131.1 + View
Prunus persica Prupe.6G349800 PF04852 - Protein of unknown function (DUF640) (DUF640) Pp06 + View
Populus trichocarpa Potri.013G046500 PF04852 - Protein of unknown function (DUF640) (DUF640) Chr13 + View
Populus trichocarpa Potri.019G018600 PF04852 - Protein of unknown function (DUF640) (DUF640) Chr19 + View
Phaseolus vulgaris Phvul.006G105500 PF04852 - Protein of unknown function (DUF640) (DUF640) Chr06 + View
Quercus lobata QL03p030755 3 - View
Rosa chinensis RcHm_v2.0_Chr3g0449731 RcHm_v2.0_Chr3 - View
Rhododendron simsii Rhsim09G0137300 chr09 + View
Salix brachista Sabra19G0028400 GWHAAZH00000019 + View
Salix brachista Sabra13G0042600 GWHAAZH00000013 + View
Sechium edule Sed0023175 LG08 - View
Sechium edule Sed0014748 LG11 - View
Solanum lycopersicum Solyc05g055020.4 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 (AHRD V3.3 *** A0A2G2WUJ9_CAPBA) SL4.0ch05 - View
Solanum lycopersicum Solyc06g083860.2 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 (AHRD V3.3 *-* A0A2G3CCG9_CAPCH) SL4.0ch06 - View
Schrenkiella parvula Sp3g03360 PTHR31165//PTHR31165:SF13 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-RELATED ch3-1 - View
Schrenkiella parvula Sp2g20180 PTHR31165//PTHR31165:SF13 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-RELATED ch2-4 + View
Solanum pennellii Sopen05g033480 Encodes a nuclear protein that mediates light regulation of seedling development in a phytochrome-dependent manner. | LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 (LSH1) | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 | BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) Spenn-ch05 - View
Solanum pennellii Sopen06g035260 LIGHT SENSITIVE HYPOCOTYLS 3 (LSH3) | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 | BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) Spenn-ch06 - View
Solanum tuberosum PGSC0003DMG400023406 Light-dependent short hypocotyls 1 ST4.03ch05 - View
Theobroma cacao Thecc.05G271300 Uncharacterized protein Chromosome_5 - View
Tarenaya hassleriana THA.LOC104802835 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 NW_010970490.1 - View
Tarenaya hassleriana THA.LOC104827287 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like NW_010967707.1 - View
Trifolium pratense TPR.G22325 Tp57577_TGAC_v2_LG1 - View
Tripterygium wilfordii TWI53G1672 NC_052244.1 - View
Vaccinium macrocarpon vmacro10362 Similar to LSH2: Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 (Arabidopsis thaliana OX%3D3702) chr8_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo0540G2067 CM024075.1 - View
Vigna mungo VMungo0720G1590 CM024071.1 + View
Zea mays Zm00001eb191830 Zm00001e023639 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 4 - View