Gene: AT3G04510
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT3G04510
- Transcript Identifier AT3G04510.1
- Gene Type Coding gene
- Location Chr3 : 1215812-1216417 : negative
Gene Family Information
- ID HOM05D000378
- #Genes/#Species 1291/95
- Phylogenetic origin
- ID ORTHO05D000256
- #Genes/#Species 1259/95
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT3G04510.1
- symbol LSH2
- full_name LIGHT SENSITIVE HYPOCOTYLS 2
- uniprot Q9M836
Descriptions
- Description LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)
- Computational description LIGHT SENSITIVE HYPOCOTYLS 2 (LSH2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT5G28490.1); Has 309 Blast hits to 309 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 297; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009299 | ISS, IBA | Gene Ontology | mRNA transcription | 1 |
| GO:0090698 | ISS | Gene Ontology | post-embryonic plant morphogenesis | |
| GO:0009416 | IBA | Gene Ontology | response to light stimulus | 1 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | GOA Database | DNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | ISS, ISM, IBA | Gene Ontology | nucleus | 1 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |