Gene: AT5G28490
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G28490
- Transcript Identifier AT5G28490.1
- Gene Type Coding gene
- Location Chr5 : 10454541-10455113 : negative
Gene Family Information
- ID HOM05D000378
- #Genes/#Species 1291/95
- Phylogenetic origin
- ID ORTHO05D000256
- #Genes/#Species 1259/95
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT5G28490.1
- symbol LSH1
- Alias OBO2,ORGAN BOUNDARY 2
- full_name LIGHT-DEPENDENT SHORT HYPOCOTYLS 1
- uniprot Q6NNI3
Descriptions
- Description LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)
- Computational description LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 (LSH1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT3G04510.1); Has 311 Blast hits to 311 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 297; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009299 | ISS, IBA | Gene Ontology | mRNA transcription | 1 |
| GO:0090698 | ISS | Gene Ontology | post-embryonic plant morphogenesis | |
| GO:0009416 | IMP IBA | Gene Ontology | response to light stimulus | 1 2 |
| GO:0009637 | IGI | Gene Ontology | response to blue light | 2 |
| GO:0009826 | IMP | Gene Ontology | unidimensional cell growth | 2 |
| GO:0010114 | IGI | Gene Ontology | response to red light | 2 |
| GO:0010218 | IGI | Gene Ontology | response to far red light | 2 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | GOA Database | DNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IDA ISM, IBA | Gene Ontology | nucleus | 1 2 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |