Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT1G14460 AAA-type ATPase family protein AAA-type ATPase family protein%3B FUNCTIONS IN: nucleoside-triphosphatase activity%2C DNA binding%2C DNA-directed DNA polymerase activity%2C nucleotide binding%2C ATP binding%3B INVOLVED IN: DNA replication%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA-type%2C core (InterPro:IPR003959)%2C ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C DNA polymerase III%2C clamp loader complex%2C gamma/delta/delta subunit%2C C-terminal (InterPro:IPR008921)%2C DNA polymerase III%2C subunit gamma/ tau (InterPro:IPR012763)%3B BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT2G02480.1)%3B Has 16118 Blast hits to 16088 proteins in 2833 species: Archae - 487%3B Bacteria - 9881%3B Metazoa - 404%3B Fungi - 514%3B Plants - 302%3B Viruses - 52%3B Other Eukaryotes - 4478 (source: NCBI BLink). Chr1 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG2G7640 LG-2 - View
Aethionema arabicum Aa31LG1G590 LG-1 + View
Acer truncatum Atru.chr6.140 chr6 - View
Actinidia chinensis Actinidia11728 Lachesis_group25 - View
Actinidia chinensis Actinidia00141 Lachesis_group12 - View
Arabidopsis lyrata AL5G11750 scaffold_5 + View
Arabidopsis lyrata AL1G26360 scaffold_1 - View
Amborella trichopoda ATR1089G146 AmTr_v1.0_scaffold00099 - View
Brassica carinata BcaB02g06496 ChrB02 - View
Brassica carinata BcaC06g34050 ChrC06 - View
Brassica carinata BcaC06g31229 ChrC06 - View
Brassica carinata BcaC05g25350 ChrC05 - View
Brassica napus C05p12290 C05 - View
Brassica napus A02p32900 A02 + View
Brassica napus A06p10490 A06 - View
Brassica napus C02p50640 C02 + View
Brassica napus A06p43600 A06 - View
Brassica napus C07p33260 C07 + View
Brassica oleracea BolC5t29981H C5 - View
Brassica oleracea BolC2t11147H C2 + View
Brassica oleracea BolC7t43837H C7 + View
Brassica rapa BraA06t27243Z A06 - View
Brassica rapa BraA06t24229Z A06 - View
Brassica rapa BraA02t08311Z A02 + View
Beta vulgaris EL10Ac6g13960 PTHR11669:SF0 - PROTEIN STICHEL-RELATED Chr6_EL10_PGA_scaffold0 + View
Camellia sinensis var. sinensis CSS0023410 PREDICTED: protein STICHEL [Nicotiana sylvestris] Contig593 - View
Corylus avellana Haze_09962 Similar to STI: Protein STICHEL (Arabidopsis thaliana OX%3D3702) 9 + View
Coffea canephora Cc02_g23760 AAA-type ATPase family protein chr2 - View
Citrus clementina Ciclev10000047m.g scaffold_5 + View
Carpinus fangiana Cfa004422 Cfa02 + View
Cardamine hirsuta CARHR145020 Replication factor C / DNA polymerase III gamma-tau subunit, putative Chr5 + View
Cardamine hirsuta CARHR014920 Replication factor C / DNA polymerase III gamma-tau subunit, putative Chr1 - View
Citrullus lanatus ClCG10G007550 replication factor C subunit 3 LENGTH=369 CG_Chr10 - View
Carica papaya Cpa.g.sc173.1 supercontig_173 + View
Capsella rubella Carub.0005s0149 PTHR11669//PTHR11669:SF0 - REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT // PROTEIN STICHEL-RELATED scaffold_5 + View
Capsella rubella Carub.0001s1418 PTHR11669//PTHR11669:SF0 - REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT // PROTEIN STICHEL-RELATED scaffold_1 - View
Davidia involucrata Dinv38444 GWHABJS00000002 + View
Durio zibethinus Duzib192G0212 NW_019168037.1 + View
Eutrema salsugineum Thhalv10003531m.g PTHR11669:SF0 - PROTEIN STICHEL-RELATED scaffold_6 - View
Eutrema salsugineum Thhalv10006609m.g PTHR11669:SF0 - PROTEIN STICHEL-RELATED scaffold_5 + View
Fragaria x ananassa FAN13G2666 PTHR11669:SF0 - PROTEIN STICHEL-RELATED Fvb5-2 + View
Fragaria x ananassa FAN04G1500 PTHR11669//PTHR11669:SF0 - REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT // PROTEIN STICHEL-RELATED Fvb5-4 + View
Fragaria x ananassa FAN18G2953 PTHR11669:SF0 - PROTEIN STICHEL-RELATED Fvb5-1 + View
Fragaria x ananassa FAN08G1514 PTHR11669:SF0 - PROTEIN STICHEL-RELATED Fvb5-3 - View
Fragaria vesca FvH4_5g27450 PTHR11669//PTHR11669:SF0 - REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT // PROTEIN STICHEL-RELATED Fvb5 + View
Glycine max Glyma.17G002500 PTHR11669//PTHR11669:SF0 - REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT // PROTEIN STICHEL-RELATED Gm17 - View
Glycine max Glyma.07G271700 PTHR11669//PTHR11669:SF0 - REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT // PROTEIN STICHEL-RELATED Gm07 + View
Hydrangea macrophylla Hma1.2p1_0157F.1_g069180 Hma1.2p1_0157F.1 - View
Lupinus albus Lalb_Chr07g0176841 PTHR11669:SF0 - PROTEIN STICHEL-RELATED Lalb_Chr07 - View
Lotus japonicus Lj4g0024332 PTHR11669:SF0 - PROTEIN STICHEL-RELATED chr4 + View
Lactuca sativa Lsat_1_v5_gn_9_83160 Lsat_1_v8_lg_9 - View
Magnolia biondii MBI06_g17066_MAGBIO AED:0.08 Chr06 + View
Malus domestica MD08G1249500 AAA-type ATPase family protein Chr08 - View
Olea europaea Oeu016649.1 chr15 - View
Petunia axillaris Peaxi162Scf00194g01049 DNA polymerase III subunit gamma/tau Peaxi162Scf00194 + View
Populus trichocarpa Potri.004G230300 PTHR11669//PTHR11669:SF0 - REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT // PROTEIN STICHEL-RELATED Chr04 - View
Quercus lobata QL02p103695 CM012294 - View
Rhododendron simsii Rhsim11G0115200 chr11 + View
Salix brachista Sabra01G0175600 GWHAAZH00000001 - View
Solanum lycopersicum Solyc01g102810.3 DNA polymerase III subunit gamma/tau (AHRD V3.3 *** A0A2K3P8Q5_TRIPR) SL4.0ch01 + View
Schrenkiella parvula Sp1g12830 PF00004//PF12169 - ATPase family associated with various cellular activities (AAA) (AAA) // DNA polymerase III subunits gamma and tau domain III (DNA_pol3_gamma3) ch1-1 - View
Schrenkiella parvula Sp2g13710 PTHR11669//PTHR11669:SF0 - REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT // PROTEIN STICHEL-RELATED ch2-4 + View
Solanum pennellii Sopen01g045210 STICHEL mutant shows trichomes with fewer than normal branches. | STICHEL (STI) | FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity, ATP binding | INVOLVED IN: trichome differentiation, trichome branching | LOCATED IN: plasma membrane | EXPRESSED IN: 20 plant structures | EXPRESSED DURING: 11 growth stages | CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core , DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal , DNA polymerase III, subunit gamma/ tau | BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein Spenn-ch01 + View
Solanum tuberosum PGSC0003DMG400018259 Replication factor C / DNA polymerase III gamma-tau subunit ST4.03ch01 + View
Tarenaya hassleriana THA.LOC104805130 protein STICHEL isoform X1 NW_010961290.1 + View
Trifolium pratense TPR.G5938 Tp57577_TGAC_v2_LG2 + View
Tripterygium wilfordii TWI23G0013 NC_052239.1 + View
Vaccinium macrocarpon vmacro01625 Similar to STI: Protein STICHEL (Arabidopsis thaliana OX%3D3702) chr1_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1215G0189 CM024074.1 - View