Functional clusters
Information
- Type InterPro
- Description UbiA prenyltransferase family
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.18 | 5 | CH_arhy_119 | 9 | 20 | 5.61862e-19 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.08 | 5 | CH_arhy_188 | 6 | 6 | 0.0000000000000110187 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.11 | 5 | CH_arhy_606 | 4 | 7 | 0.000000761467 |
| Camellia sinensis var. sinensis | Chr14 | 5 | CH_camsi_1114 | 3 | 13 | 0.000148601 |
| Citrus clementina | scaffold_1 | 5 | CH_ccl_89 | 7 | 8 | 1.70442e-16 |
| Daucus carota | DCARv2_Chr8 | 5 | CH_dca_133 | 5 | 15 | 0.00000000229825 |
| Helianthus annuus | HanXRQChr13 | 5 | CH_han_625 | 3 | 4 | 0.00000407592 |
| Helianthus annuus | HanXRQChr10 | 5 | CH_han_942 | 4 | 63 | 0.000139199 |
| Phaseolus vulgaris | Chr07 | 5 | CH_pvu_28 | 9 | 9 | 5.85858e-26 |
| Phaseolus vulgaris | Chr07 | 5 | CH_pvu_391 | 3 | 4 | 0.0000264188 |
| Vigna mungo | CM024071.1 | 5 | CH_vmu_13 | 10 | 32 | 1.64842e-21 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.18 | 6 | CH_arhy_119 | 9 | 20 | 5.61862e-19 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.08 | 6 | CH_arhy_188 | 6 | 6 | 0.0000000000000110187 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.11 | 6 | CH_arhy_606 | 4 | 7 | 0.000000761467 |
| Camellia sinensis var. sinensis | Chr14 | 6 | CH_camsi_1114 | 3 | 13 | 0.000148601 |
| Citrus clementina | scaffold_1 | 6 | CH_ccl_89 | 7 | 8 | 1.70442e-16 |
| Daucus carota | DCARv2_Chr8 | 6 | CH_dca_133 | 5 | 15 | 0.00000000229825 |
| Helianthus annuus | HanXRQChr13 | 6 | CH_han_625 | 3 | 4 | 0.00000407592 |
| Helianthus annuus | HanXRQChr10 | 6 | CH_han_942 | 4 | 63 | 0.000139199 |
| Phaseolus vulgaris | Chr07 | 6 | CH_pvu_28 | 9 | 9 | 5.85858e-26 |
| Phaseolus vulgaris | Chr07 | 6 | CH_pvu_391 | 3 | 4 | 0.0000264188 |
| Vigna mungo | CM024071.1 | 6 | CH_vmu_13 | 10 | 32 | 1.64842e-21 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| IPR006369 | Protohaem IX farnesyltransferase | 4 |
| IPR006370 | 4-hydroxybenzoate polyprenyltransferase-like | 4 |
| IPR006372 | Bacteriochlorophyll/chlorophyll synthetase | 3 |
| IPR011799 | Chlorophyll synthase, ChlG | 2 |
| IPR011937 | 2-carboxy-1,4-naphthoquinone phytyltransferase | 4 |
| IPR026046 | UbiA prenyltransferase domain containing protein 1 | 6 |
| IPR039653 | Prenyltransferase | 24 |
| IPR044502 | Homogentisate solanesyltransferase AtHST-like | 11 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |