Functional clusters

Information

  • Type Gene Ontology
  • Description cellular developmental process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Cucumis melo chr11 3 CH_cme_146 9 22 0.0000248977
Physcomitrium patens Chr10 3 CH_ppa_228 7 12 0.000858826
Cucumis melo chr11 4 CH_cme_146 9 22 0.0000248977
Physcomitrium patens Chr10 4 CH_ppa_228 7 12 0.000858826

Available child term results

Ontology identifier Description Number of clusters
GO:0001708 cell fate specification 2
GO:0001709 cell fate determination 8
GO:0009556 microsporogenesis 2
GO:0009557 antipodal cell differentiation 2
GO:0009559 embryo sac central cell differentiation 2
GO:0009860 pollen tube growth 14
GO:0009913 epidermal cell differentiation 2
GO:0009957 epidermal cell fate specification 4
GO:0010026 trichome differentiation 2
GO:0010052 guard cell differentiation 4
GO:0010054 trichoblast differentiation 2
GO:0010063 positive regulation of trichoblast fate specification 2
GO:0010090 trichome morphogenesis 12
GO:0010091 trichome branching 2
GO:0010158 abaxial cell fate specification 6
GO:0010197 polar nucleus fusion 28
GO:0010198 synergid death 14
GO:0010234 anther wall tapetum cell fate specification 12
GO:0010235 guard mother cell cytokinesis 2
GO:0010440 stomatal lineage progression 4
GO:0010442 guard cell morphogenesis 22
GO:0010455 positive regulation of cell fate commitment 2
GO:0010480 microsporocyte differentiation 4
GO:0010584 pollen exine formation 8
GO:0010623 programmed cell death involved in cell development 6
GO:0010654 apical cell fate commitment 2
GO:0022619 generative cell differentiation 12
GO:0035987 endodermal cell differentiation 6
GO:0045168 cell-cell signaling involved in cell fate commitment 16
GO:0045595 regulation of cell differentiation 6
GO:0045604 regulation of epidermal cell differentiation 6
GO:0045691 regulation of embryo sac central cell differentiation 4
GO:0045694 regulation of embryo sac egg cell differentiation 2
GO:0048235 pollen sperm cell differentiation 18
GO:0048236 plant-type sporogenesis 16
GO:0048240 sperm capacitation 26
GO:0048468 cell development 2
GO:0048505 regulation of timing of cell differentiation 2
GO:0048629 trichome patterning 8
GO:0048767 root hair elongation 12
GO:0048768 root hair cell tip growth 4
GO:0048863 stem cell differentiation 2
GO:0048867 stem cell fate determination 2
GO:0080110 sporopollenin biosynthetic process 4
GO:0080147 root hair cell development 4
GO:0090342 regulation of cell aging 4
GO:0090344 negative regulation of cell aging 8
GO:0090392 sepal giant cell differentiation 6
GO:0090437 socket cell differentiation 4
GO:0090602 sieve element enucleation 4
GO:1900032 regulation of trichome patterning 4
GO:1902892 positive regulation of root hair elongation 2
GO:1903224 regulation of endodermal cell differentiation 2
GO:1904159 megasporocyte differentiation 2
GO:1905177 tracheary element differentiation 2
GO:1905499 trichome papilla formation 8

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001