Functional clusters
Information
- Type Gene Ontology
- Description oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-1 | 3 | CH_aar_11 | 8 | 9 | 2.33044e-19 |
| Aethionema arabicum | LG-1 | 3 | CH_aar_178 | 3 | 4 | 0.000129743 |
| Actinidia chinensis | Lachesis_group27 | 3 | CH_ach_139 | 3 | 5 | 0.000078322 |
| Arabidopsis lyrata | scaffold_1 | 3 | CH_aly_122 | 5 | 33 | 0.00000141408 |
| Arabidopsis lyrata | scaffold_3 | 3 | CH_aly_229 | 3 | 5 | 0.000132124 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_1 | 3 | CH_amhyb_78 | 3 | 3 | 0.00000867295 |
| Arabidopsis thaliana | Chr3 | 3 | CH_ath_63 | 5 | 7 | 0.0000000000213542 |
| Brassica carinata | ChrC07 | 3 | CH_bca_522 | 3 | 3 | 0.0000501396 |
| Brassica carinata | ChrC09 | 3 | CH_bca_685 | 3 | 4 | 0.000200437 |
| Brassica carinata | ChrC05 | 3 | CH_bca_849 | 3 | 5 | 0.00050079 |
| Brassica napus | A09 | 3 | CH_bna_168 | 4 | 4 | 0.0000000407424 |
| Brassica napus | A03 | 3 | CH_bna_199 | 4 | 6 | 0.000000203586 |
| Brassica napus | C08 | 3 | CH_bna_209 | 5 | 18 | 0.000000263481 |
| Brassica napus | C05 | 3 | CH_bna_297 | 5 | 31 | 0.00000518204 |
| Brassica napus | A05 | 3 | CH_bna_507 | 3 | 4 | 0.000211436 |
| Brassica napus | C08 | 3 | CH_bna_508 | 3 | 4 | 0.000211436 |
| Brassica napus | C05 | 3 | CH_bna_614 | 3 | 5 | 0.00052828 |
| Brassica oleracea | C8 | 3 | CH_bol_124 | 5 | 20 | 0.000000180392 |
| Brassica oleracea | C8 | 3 | CH_bol_273 | 3 | 4 | 0.0000972571 |
| Brassica oleracea | C3 | 3 | CH_bol_315 | 3 | 5 | 0.000243011 |
| Citrullus lanatus | CG_Chr07 | 3 | CH_cla_2 | 9 | 11 | 6.02495e-21 |
| Capsella rubella | scaffold_1 | 3 | CH_cru_186 | 3 | 3 | 0.0000142018 |
| Capsella rubella | scaffold_3 | 3 | CH_cru_245 | 3 | 5 | 0.000141852 |
| Daucus carota | DCARv2_Chr4 | 3 | CH_dca_326 | 3 | 5 | 0.000247388 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 3 | CH_eca_96 | 4 | 4 | 0.0000000247732 |
| Eutrema salsugineum | scaffold_5 | 3 | CH_esa_91 | 5 | 27 | 0.000000853442 |
| Helianthus annuus | HanXRQChr02 | 3 | CH_han_111 | 6 | 9 | 0.00000000000731964 |
| Helianthus annuus | HanXRQChr06 | 3 | CH_han_598 | 5 | 54 | 0.000253527 |
| Lactuca sativa | Lsat_1_v8_lg_9 | 3 | CH_lsa_53 | 7 | 10 | 0.0000000000000232522 |
| Prunus persica | Pp04 | 3 | CH_ppe_36 | 8 | 10 | 3.30465e-18 |
| Populus trichocarpa | Chr01 | 3 | CH_ptr_295 | 3 | 4 | 0.0000460818 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 3 | CH_rch_110 | 10 | 77 | 0.000000000000325866 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 3 | CH_rch_602 | 4 | 14 | 0.000119716 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 3 | CH_rch_681 | 3 | 4 | 0.000396922 |
| Salix brachista | GWHAAZH00000011 | 3 | CH_sbr_255 | 3 | 5 | 0.0000916393 |
| Schrenkiella parvula | ch3-1 | 3 | CH_spa_136 | 3 | 5 | 0.000123534 |
| Schrenkiella parvula | ch3-1 | 3 | CH_spa_137 | 3 | 5 | 0.000123534 |
| Solanum pennellii | Spenn-ch12 | 3 | CH_spe_110 | 4 | 4 | 0.000000008307 |
| Solanum tuberosum | ST4.03ch12 | 3 | CH_stu_66 | 7 | 11 | 0.00000000000000722013 |
| Tarenaya hassleriana | NW_010969548.1 | 3 | CH_tha_34 | 4 | 4 | 0.0000000209332 |
| Aethionema arabicum | LG-1 | 4 | CH_aar_11 | 8 | 9 | 2.33044e-19 |
| Aethionema arabicum | LG-1 | 4 | CH_aar_178 | 3 | 4 | 0.000129743 |
| Actinidia chinensis | Lachesis_group27 | 4 | CH_ach_139 | 3 | 5 | 0.000078322 |
| Arabidopsis lyrata | scaffold_1 | 4 | CH_aly_122 | 5 | 33 | 0.00000141408 |
| Arabidopsis lyrata | scaffold_3 | 4 | CH_aly_229 | 3 | 5 | 0.000132124 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_1 | 4 | CH_amhyb_78 | 3 | 3 | 0.00000867295 |
| Arabidopsis thaliana | Chr3 | 4 | CH_ath_63 | 5 | 7 | 0.0000000000213542 |
| Brassica carinata | ChrC07 | 4 | CH_bca_522 | 3 | 3 | 0.0000501396 |
| Brassica carinata | ChrC09 | 4 | CH_bca_685 | 3 | 4 | 0.000200437 |
| Brassica carinata | ChrC05 | 4 | CH_bca_849 | 3 | 5 | 0.00050079 |
| Brassica napus | A09 | 4 | CH_bna_168 | 4 | 4 | 0.0000000407424 |
| Brassica napus | A03 | 4 | CH_bna_199 | 4 | 6 | 0.000000203586 |
| Brassica napus | C08 | 4 | CH_bna_209 | 5 | 18 | 0.000000263481 |
| Brassica napus | C05 | 4 | CH_bna_297 | 5 | 31 | 0.00000518204 |
| Brassica napus | A05 | 4 | CH_bna_507 | 3 | 4 | 0.000211436 |
| Brassica napus | C08 | 4 | CH_bna_508 | 3 | 4 | 0.000211436 |
| Brassica napus | C05 | 4 | CH_bna_614 | 3 | 5 | 0.00052828 |
| Brassica oleracea | C8 | 4 | CH_bol_124 | 5 | 20 | 0.000000180392 |
| Brassica oleracea | C8 | 4 | CH_bol_273 | 3 | 4 | 0.0000972571 |
| Brassica oleracea | C3 | 4 | CH_bol_315 | 3 | 5 | 0.000243011 |
| Citrullus lanatus | CG_Chr07 | 4 | CH_cla_2 | 9 | 11 | 6.02495e-21 |
| Capsella rubella | scaffold_1 | 4 | CH_cru_186 | 3 | 3 | 0.0000142018 |
| Capsella rubella | scaffold_3 | 4 | CH_cru_245 | 3 | 5 | 0.000141852 |
| Daucus carota | DCARv2_Chr4 | 4 | CH_dca_326 | 3 | 5 | 0.000247388 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 4 | CH_eca_96 | 4 | 4 | 0.0000000247732 |
| Eutrema salsugineum | scaffold_5 | 4 | CH_esa_91 | 5 | 27 | 0.000000853442 |
| Helianthus annuus | HanXRQChr02 | 4 | CH_han_111 | 6 | 9 | 0.00000000000731964 |
| Helianthus annuus | HanXRQChr06 | 4 | CH_han_598 | 5 | 54 | 0.000253527 |
| Lactuca sativa | Lsat_1_v8_lg_9 | 4 | CH_lsa_53 | 7 | 10 | 0.0000000000000232522 |
| Prunus persica | Pp04 | 4 | CH_ppe_36 | 8 | 10 | 3.30465e-18 |
| Populus trichocarpa | Chr01 | 4 | CH_ptr_295 | 3 | 4 | 0.0000460818 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 4 | CH_rch_110 | 10 | 77 | 0.000000000000325866 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 4 | CH_rch_602 | 4 | 14 | 0.000119716 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 4 | CH_rch_681 | 3 | 4 | 0.000396922 |
| Salix brachista | GWHAAZH00000011 | 4 | CH_sbr_255 | 3 | 5 | 0.0000916393 |
| Schrenkiella parvula | ch3-1 | 4 | CH_spa_136 | 3 | 5 | 0.000123534 |
| Schrenkiella parvula | ch3-1 | 4 | CH_spa_137 | 3 | 5 | 0.000123534 |
| Solanum pennellii | Spenn-ch12 | 4 | CH_spe_110 | 4 | 4 | 0.000000008307 |
| Solanum tuberosum | ST4.03ch12 | 4 | CH_stu_66 | 7 | 11 | 0.00000000000000722013 |
| Tarenaya hassleriana | NW_010969548.1 | 4 | CH_tha_34 | 4 | 4 | 0.0000000209332 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0000248 | C-5 sterol desaturase activity | 14 |
| GO:0000249 | C-22 sterol desaturase activity | 28 |
| GO:0004768 | stearoyl-CoA 9-desaturase activity | 18 |
| GO:0016215 | acyl-CoA desaturase activity | 40 |
| GO:0042284 | sphingolipid delta-4 desaturase activity | 2 |
| GO:0045300 | acyl-[acyl-carrier-protein] desaturase activity | 66 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |