Functional clusters

Information

  • Type Gene Ontology
  • Description sulfur compound metabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Vaccinium macrocarpon chr6_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_125 11 44 0.000000574339
Vanilla planifolia CM028150.1 3 CH_vpl_280 9 49 0.000256344
Vaccinium macrocarpon chr6_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_125 11 44 0.000000574339
Vanilla planifolia CM028150.1 4 CH_vpl_280 9 49 0.000256344

Available child term results

Ontology identifier Description Number of clusters
GO:0006085 acetyl-CoA biosynthetic process 2
GO:0006104 succinyl-CoA metabolic process 6
GO:0006535 cysteine biosynthetic process from serine 2
GO:0006557 S-adenosylmethioninamine biosynthetic process 2
GO:0006749 glutathione metabolic process 210
GO:0009228 thiamine biosynthetic process 4
GO:0009229 thiamine diphosphate biosynthetic process 2
GO:0009759 indole glucosinolate biosynthetic process 20
GO:0010364 regulation of ethylene biosynthetic process 4
GO:0010365 positive regulation of ethylene biosynthetic process 16
GO:0010366 negative regulation of ethylene biosynthetic process 4
GO:0016226 iron-sulfur cluster assembly 20
GO:0018283 iron incorporation into metallo-sulfur cluster 6
GO:0019279 L-methionine biosynthetic process from L-homoserine via cystathionine 2
GO:0019346 transsulfuration 8
GO:0019427 acetyl-CoA biosynthetic process from acetate 2
GO:0019447 D-cysteine catabolic process 12
GO:0019450 L-cysteine catabolic process to pyruvate 8
GO:0019458 methionine catabolic process via 2-oxobutanoate 10
GO:0019509 L-methionine salvage from methylthioadenosine 6
GO:0019760 glucosinolate metabolic process 4
GO:0019761 glucosinolate biosynthetic process 2
GO:0019762 glucosinolate catabolic process 12
GO:0033353 S-adenosylmethionine cycle 6
GO:0033355 ascorbate glutathione cycle 22
GO:0033506 glucosinolate biosynthetic process from homomethionine 4
GO:0033512 L-lysine catabolic process to acetyl-CoA via saccharopine 2
GO:0035336 long-chain fatty-acyl-CoA metabolic process 6
GO:0042343 indole glucosinolate metabolic process 8
GO:0042344 indole glucosinolate catabolic process 2
GO:0044273 sulfur compound catabolic process 2
GO:0044571 [2Fe-2S] cluster assembly 4
GO:0046500 S-adenosylmethionine metabolic process 2
GO:0046949 fatty-acyl-CoA biosynthetic process 4
GO:0051923 sulfation 4
GO:0071266 'de novo' L-methionine biosynthetic process 4
GO:0071267 L-methionine salvage 2
GO:1900486 positive regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway 8
GO:1902190 2-methylbutanoyl-CoA(4-) catabolic process 6
GO:2001294 malonyl-CoA catabolic process 18

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001