Functional clusters
Information
- Type Gene Ontology
- Description extracellular region
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Actinidia chinensis | Lachesis_group26 | 3 | CH_ach_112 | 5 | 6 | 0.0000427798 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.12 | 3 | CH_arhy_546 | 5 | 7 | 0.000189546 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.02 | 3 | CH_arhy_547 | 5 | 7 | 0.000189546 |
| Arabidopsis thaliana | Chr4 | 3 | CH_ath_128 | 15 | 27 | 0.0000000181684 |
| Arabidopsis thaliana | Chr3 | 3 | CH_ath_33 | 23 | 41 | 0.00000000000000550906 |
| Arabidopsis thaliana | Chr4 | 3 | CH_ath_410 | 19 | 71 | 0.0000789339 |
| Arabidopsis thaliana | Chr5 | 3 | CH_ath_434 | 15 | 44 | 0.000107586 |
| Arabidopsis thaliana | Chr1 | 3 | CH_ath_620 | 16 | 58 | 0.000993736 |
| Beta vulgaris | Chr9_EL10_PGA_scaffold8 | 3 | CH_bvu_83 | 11 | 40 | 0.000000086954 |
| Cannabis sativa | NC_044374.1 | 3 | CH_cansat_245 | 5 | 7 | 0.00012397 |
| Coffea canephora | chr8 | 3 | CH_ccan_232 | 5 | 40 | 0.0000789095 |
| Cucumis melo | chr01 | 3 | CH_cme_56 | 9 | 12 | 0.0000000023418 |
| Cucumis melo | chr01 | 3 | CH_cme_64 | 8 | 9 | 0.0000000051718 |
| Corchorus olitorius | AWUE01016384.1 | 3 | CH_col_99 | 5 | 6 | 0.000594538 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2314 | 3 | CH_cqu_178 | 6 | 6 | 0.000000434363 |
| Cucumis sativus L. | chr7 | 3 | CH_csa_106 | 6 | 6 | 0.000000223118 |
| Eucalyptus grandis | Chr01 | 3 | CH_egr_491 | 6 | 6 | 0.000000511894 |
| Glycine max | Gm17 | 3 | CH_gma_459 | 5 | 7 | 0.00051167 |
| Lactuca sativa | Lsat_1_v8_lg_9 | 3 | CH_lsa_412 | 5 | 7 | 0.00024331 |
| Oryza sativa ssp. japonica | chr06 | 3 | CH_osa_190 | 7 | 8 | 0.00000174707 |
| Oryza sativa ssp. japonica | chr12 | 3 | CH_osa_303 | 6 | 7 | 0.0000616705 |
| Oryza sativa ssp. japonica | chr07 | 3 | CH_osa_71 | 12 | 19 | 0.000000000088394 |
| Populus trichocarpa | Chr05 | 3 | CH_ptr_253 | 6 | 7 | 0.0000028029 |
| Quercus lobata | 11 | 3 | CH_qlo_352 | 14 | 39 | 0.00000000971612 |
| Sequoiadendron giganteum | chr1 | 3 | CH_sgi_1037 | 5 | 5 | 0.0000797149 |
| Sequoiadendron giganteum | chr11 | 3 | CH_sgi_527 | 9 | 14 | 0.0000000154099 |
| Solanum tuberosum | ST4.03ch08 | 3 | CH_stu_254 | 7 | 8 | 0.000000914504 |
| Solanum tuberosum | ST4.03ch12 | 3 | CH_stu_292 | 6 | 6 | 0.00000518273 |
| Tripterygium wilfordii | NC_052254.1 | 3 | CH_twi_230 | 5 | 6 | 0.000160212 |
| Actinidia chinensis | Lachesis_group26 | 4 | CH_ach_112 | 5 | 6 | 0.0000427798 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.12 | 4 | CH_arhy_546 | 5 | 7 | 0.000189546 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.02 | 4 | CH_arhy_547 | 5 | 7 | 0.000189546 |
| Arabidopsis thaliana | Chr4 | 4 | CH_ath_128 | 15 | 27 | 0.0000000181684 |
| Arabidopsis thaliana | Chr3 | 4 | CH_ath_33 | 23 | 41 | 0.00000000000000550906 |
| Arabidopsis thaliana | Chr4 | 4 | CH_ath_410 | 19 | 71 | 0.0000789339 |
| Arabidopsis thaliana | Chr5 | 4 | CH_ath_434 | 15 | 44 | 0.000107586 |
| Arabidopsis thaliana | Chr1 | 4 | CH_ath_620 | 16 | 58 | 0.000993736 |
| Beta vulgaris | Chr9_EL10_PGA_scaffold8 | 4 | CH_bvu_83 | 11 | 40 | 0.000000086954 |
| Cannabis sativa | NC_044374.1 | 4 | CH_cansat_245 | 5 | 7 | 0.00012397 |
| Coffea canephora | chr8 | 4 | CH_ccan_232 | 5 | 40 | 0.0000789095 |
| Cucumis melo | chr01 | 4 | CH_cme_56 | 9 | 12 | 0.0000000023418 |
| Cucumis melo | chr01 | 4 | CH_cme_64 | 8 | 9 | 0.0000000051718 |
| Corchorus olitorius | AWUE01016384.1 | 4 | CH_col_99 | 5 | 6 | 0.000594538 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2314 | 4 | CH_cqu_178 | 6 | 6 | 0.000000434363 |
| Cucumis sativus L. | chr7 | 4 | CH_csa_106 | 6 | 6 | 0.000000223118 |
| Eucalyptus grandis | Chr01 | 4 | CH_egr_491 | 6 | 6 | 0.000000511894 |
| Glycine max | Gm17 | 4 | CH_gma_459 | 5 | 7 | 0.00051167 |
| Lactuca sativa | Lsat_1_v8_lg_9 | 4 | CH_lsa_412 | 5 | 7 | 0.00024331 |
| Oryza sativa ssp. japonica | chr06 | 4 | CH_osa_190 | 7 | 8 | 0.00000174707 |
| Oryza sativa ssp. japonica | chr12 | 4 | CH_osa_303 | 6 | 7 | 0.0000616705 |
| Oryza sativa ssp. japonica | chr07 | 4 | CH_osa_71 | 12 | 19 | 0.000000000088394 |
| Populus trichocarpa | Chr05 | 4 | CH_ptr_253 | 6 | 7 | 0.0000028029 |
| Quercus lobata | 11 | 4 | CH_qlo_352 | 14 | 39 | 0.00000000971612 |
| Sequoiadendron giganteum | chr1 | 4 | CH_sgi_1037 | 5 | 5 | 0.0000797149 |
| Sequoiadendron giganteum | chr11 | 4 | CH_sgi_527 | 9 | 14 | 0.0000000154099 |
| Solanum tuberosum | ST4.03ch08 | 4 | CH_stu_254 | 7 | 8 | 0.000000914504 |
| Solanum tuberosum | ST4.03ch12 | 4 | CH_stu_292 | 6 | 6 | 0.00000518273 |
| Tripterygium wilfordii | NC_052254.1 | 4 | CH_twi_230 | 5 | 6 | 0.000160212 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0005615 | extracellular space | 32 |
| GO:0048046 | apoplast | 46 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |