Functional clusters
Information
- Type Gene Ontology
- Description apoplast
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Corylus avellana | 10 | 3 | CH_cav_273 | 7 | 25 | 0.0000824137 |
| Citrus clementina | scaffold_9 | 3 | CH_ccl_155 | 13 | 67 | 0.0000000460201 |
| Carpinus fangiana | Cfa06 | 3 | CH_cfa_282 | 4 | 4 | 0.00025393 |
| Carya illinoinensis | Chr01 | 3 | CH_cil_276 | 5 | 5 | 0.00000693378 |
| Corchorus olitorius | AWUE01016326.1 | 3 | CH_col_2 | 16 | 17 | 1.56573e-24 |
| Corchorus olitorius | AWUE01020342.1 | 3 | CH_col_55 | 5 | 6 | 0.00004964 |
| Gossypium hirsutum | D01 | 3 | CH_ghi_612 | 4 | 4 | 0.000537863 |
| Glycine max | Gm07 | 3 | CH_gma_485 | 4 | 4 | 0.000583371 |
| Malus domestica | Chr16 | 3 | CH_mdo_351 | 5 | 6 | 0.0000138968 |
| Malus domestica | Chr13 | 3 | CH_mdo_423 | 5 | 7 | 0.0000482958 |
| Medicago truncatula | chr4 | 3 | CH_mtr_718 | 4 | 5 | 0.00064311 |
| Oryza sativa ssp. japonica | chr11 | 3 | CH_osa_142 | 6 | 6 | 0.000000101753 |
| Oryza sativa ssp. japonica | chr11 | 3 | CH_osa_234 | 5 | 5 | 0.00000867789 |
| Punica granatum | NC_045132.1 | 3 | CH_pgr_124 | 7 | 8 | 0.0000000393673 |
| Punica granatum | NC_045133.1 | 3 | CH_pgr_149 | 6 | 6 | 0.000000330577 |
| Prunus persica | Pp01 | 3 | CH_ppe_404 | 4 | 4 | 0.000335203 |
| Papaver somniferum | NC_039366.1 | 3 | CH_pso_691 | 5 | 11 | 0.000960081 |
| Quercus lobata | 7 | 3 | CH_qlo_253 | 8 | 8 | 0.0000000000713189 |
| Quercus lobata | 4 | 3 | CH_qlo_669 | 5 | 5 | 0.0000242421 |
| Quercus lobata | CM012294 | 3 | CH_qlo_995 | 10 | 61 | 0.00067389 |
| Sequoiadendron giganteum | chr3 | 3 | CH_sgi_902 | 5 | 5 | 0.0000273747 |
| Solanum lycopersicum | SL4.0ch10 | 3 | CH_sly_391 | 8 | 37 | 0.000147663 |
| Solanum tuberosum | ST4.03ch10 | 3 | CH_stu_60 | 12 | 20 | 0.00000000000000195885 |
| Corylus avellana | 10 | 4 | CH_cav_273 | 7 | 25 | 0.0000824137 |
| Citrus clementina | scaffold_9 | 4 | CH_ccl_155 | 13 | 67 | 0.0000000460201 |
| Carpinus fangiana | Cfa06 | 4 | CH_cfa_282 | 4 | 4 | 0.00025393 |
| Carya illinoinensis | Chr01 | 4 | CH_cil_276 | 5 | 5 | 0.00000693378 |
| Corchorus olitorius | AWUE01016326.1 | 4 | CH_col_2 | 16 | 17 | 1.56573e-24 |
| Corchorus olitorius | AWUE01020342.1 | 4 | CH_col_55 | 5 | 6 | 0.00004964 |
| Gossypium hirsutum | D01 | 4 | CH_ghi_612 | 4 | 4 | 0.000537863 |
| Glycine max | Gm07 | 4 | CH_gma_485 | 4 | 4 | 0.000583371 |
| Malus domestica | Chr16 | 4 | CH_mdo_351 | 5 | 6 | 0.0000138968 |
| Malus domestica | Chr13 | 4 | CH_mdo_423 | 5 | 7 | 0.0000482958 |
| Medicago truncatula | chr4 | 4 | CH_mtr_718 | 4 | 5 | 0.00064311 |
| Oryza sativa ssp. japonica | chr11 | 4 | CH_osa_142 | 6 | 6 | 0.000000101753 |
| Oryza sativa ssp. japonica | chr11 | 4 | CH_osa_234 | 5 | 5 | 0.00000867789 |
| Punica granatum | NC_045132.1 | 4 | CH_pgr_124 | 7 | 8 | 0.0000000393673 |
| Punica granatum | NC_045133.1 | 4 | CH_pgr_149 | 6 | 6 | 0.000000330577 |
| Prunus persica | Pp01 | 4 | CH_ppe_404 | 4 | 4 | 0.000335203 |
| Papaver somniferum | NC_039366.1 | 4 | CH_pso_691 | 5 | 11 | 0.000960081 |
| Quercus lobata | 7 | 4 | CH_qlo_253 | 8 | 8 | 0.0000000000713189 |
| Quercus lobata | 4 | 4 | CH_qlo_669 | 5 | 5 | 0.0000242421 |
| Quercus lobata | CM012294 | 4 | CH_qlo_995 | 10 | 61 | 0.00067389 |
| Sequoiadendron giganteum | chr3 | 4 | CH_sgi_902 | 5 | 5 | 0.0000273747 |
| Solanum lycopersicum | SL4.0ch10 | 4 | CH_sly_391 | 8 | 37 | 0.000147663 |
| Solanum tuberosum | ST4.03ch10 | 4 | CH_stu_60 | 12 | 20 | 0.00000000000000195885 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |