Functional clusters
Information
- Type MapMan
- Description Coenzyme metabolism.phylloquinone biosynthesis
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Coffea canephora | chr11 | 1 | CH_ccan_58 | 4 | 25 | 0.00000000293324 |
| Sequoiadendron giganteum | chr11 | 1 | CH_sgi_330 | 4 | 4 | 0.000000000347199 |
| Coffea canephora | chr11 | 2 | CH_ccan_58 | 4 | 25 | 0.00000000293324 |
| Sequoiadendron giganteum | chr11 | 2 | CH_sgi_330 | 4 | 4 | 0.000000000347199 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| 7.14.1.1 | Coenzyme metabolism.phylloquinone biosynthesis.salvage phytyl-diphosphate biosynthesis.phytyl-phosphate kinase (VTE6) | 6 |
| 7.14.3 | Coenzyme metabolism.phylloquinone biosynthesis.multifunctional phylloquinone biosynthesis protein (PHYLLO) | 20 |
| 7.14.4 | Coenzyme metabolism.phylloquinone biosynthesis.2-succinylbenzoate:CoA ligase (MenE) | 2 |
| 7.14.5 | Coenzyme metabolism.phylloquinone biosynthesis.1,4-dihydroxy-2-naphthoyl-CoA synthase (MenB/DHNS) | 9 |
| 7.14.6 | Coenzyme metabolism.phylloquinone biosynthesis.1,4-dihydroxy-2-naphthoyl-CoA thioesterase (MenH/DHNAT) | 63 |
| 7.14.7 | Coenzyme metabolism.phylloquinone biosynthesis.1,4-dihydroxy-2-naphtoate-phytyltransferase (MenA/ABC4) | 10 |
| 7.14.8 | Coenzyme metabolism.phylloquinone biosynthesis.2-phytyl-1,4-naphthoquinone methyltransferase (MenG) | 6 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |