Functional clusters
Information
- Type MapMan
- Description Coenzyme metabolism.phylloquinone biosynthesis.1,4-dihydroxy-2-naphthoyl-CoA thioesterase (MenH/DHNAT)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Avicennia marina | ScioBoG_25048_HRSCAF_25167 | 1 | CH_ama_129 | 2 | 2 | 0.000517331 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_7 | 1 | CH_amhyb_164 | 2 | 2 | 0.0000841751 |
| Beta vulgaris | Chr3_EL10_PGA_scaffold7 | 1 | CH_bvu_200 | 2 | 2 | 0.0000827917 |
| Camellia sinensis var. sinensis | Chr12 | 1 | CH_camsi_195 | 4 | 25 | 0.0000000036575 |
| Cannabis sativa | NC_044376.1 | 1 | CH_cansat_394 | 2 | 6 | 0.000984834 |
| Coffea canephora | chr4 | 1 | CH_ccan_288 | 2 | 9 | 0.000255531 |
| Citrus clementina | scaffold_9 | 1 | CH_ccl_339 | 2 | 2 | 0.0000820311 |
| Carpinus fangiana | Cfa06 | 1 | CH_cfa_255 | 2 | 2 | 0.0000757346 |
| Citrullus lanatus | CG_Chr05 | 1 | CH_cla_30 | 3 | 3 | 0.0000000118051 |
| Cucumis melo | chr06 | 1 | CH_cme_206 | 2 | 2 | 0.0000667111 |
| Chenopodium quinoa | C_Quinoa_Scaffold_4480 | 1 | CH_cqu_388 | 2 | 2 | 0.000142146 |
| Cucumis sativus L. | chr3 | 1 | CH_csa_226 | 2 | 2 | 0.0000834759 |
| Erigeron canadensis | Conyza_canadensis_scaffold:8 | 1 | CH_eca_89 | 3 | 3 | 0.00000000302034 |
| Eutrema salsugineum | scaffold_7 | 1 | CH_esa_295 | 2 | 2 | 0.000456899 |
| Fragaria x ananassa | Fvb4-4 | 1 | CH_fan_411 | 2 | 3 | 0.00016653 |
| Fragaria vesca | Fvb4 | 1 | CH_fve_329 | 2 | 3 | 0.000176725 |
| Glycine max | Gm09 | 1 | CH_gma_586 | 2 | 3 | 0.000683172 |
| Lupinus albus | Lalb_Chr03 | 1 | CH_lal_327 | 2 | 2 | 0.000314895 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 1 | CH_lsa_148 | 3 | 4 | 0.0000000158522 |
| Nelumbo nucifera | chr4 | 1 | CH_nnu_355 | 2 | 4 | 0.000261597 |
| Punica granatum | NC_045131.1 | 1 | CH_pgr_234 | 2 | 2 | 0.0000750356 |
| Prunus persica | Pp05 | 1 | CH_ppe_445 | 2 | 4 | 0.000447544 |
| Pisum sativum | chr1LG6 | 1 | CH_psa_235 | 2 | 2 | 0.0000521635 |
| Populus trichocarpa | Chr10 | 1 | CH_ptr_355 | 2 | 3 | 0.000173395 |
| Quercus lobata | 6 | 1 | CH_qlo_831 | 2 | 2 | 0.000154887 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 1 | CH_rch_653 | 2 | 4 | 0.000239182 |
| Salix brachista | GWHAAZH00000010 | 1 | CH_sbr_368 | 2 | 3 | 0.000567096 |
| Simmondsia chinensis | GWHAASQ00000025 | 1 | CH_sci_238 | 2 | 2 | 0.000255428 |
| Sechium edule | LG12 | 1 | CH_sed_269 | 2 | 2 | 0.000214026 |
| Solanum lycopersicum | SL4.0ch03 | 1 | CH_sly_181 | 3 | 6 | 0.000000413348 |
| Schrenkiella parvula | ch1-2 | 1 | CH_spa_236 | 2 | 2 | 0.000236202 |
| Avicennia marina | ScioBoG_25048_HRSCAF_25167 | 2 | CH_ama_129 | 2 | 2 | 0.000517331 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_7 | 2 | CH_amhyb_164 | 2 | 2 | 0.0000841751 |
| Beta vulgaris | Chr3_EL10_PGA_scaffold7 | 2 | CH_bvu_200 | 2 | 2 | 0.0000827917 |
| Camellia sinensis var. sinensis | Chr12 | 2 | CH_camsi_195 | 4 | 25 | 0.0000000036575 |
| Cannabis sativa | NC_044376.1 | 2 | CH_cansat_394 | 2 | 6 | 0.000984834 |
| Coffea canephora | chr4 | 2 | CH_ccan_288 | 2 | 9 | 0.000255531 |
| Citrus clementina | scaffold_9 | 2 | CH_ccl_339 | 2 | 2 | 0.0000820311 |
| Carpinus fangiana | Cfa06 | 2 | CH_cfa_255 | 2 | 2 | 0.0000757346 |
| Citrullus lanatus | CG_Chr05 | 2 | CH_cla_30 | 3 | 3 | 0.0000000118051 |
| Cucumis melo | chr06 | 2 | CH_cme_206 | 2 | 2 | 0.0000667111 |
| Chenopodium quinoa | C_Quinoa_Scaffold_4480 | 2 | CH_cqu_388 | 2 | 2 | 0.000142146 |
| Cucumis sativus L. | chr3 | 2 | CH_csa_226 | 2 | 2 | 0.0000834759 |
| Erigeron canadensis | Conyza_canadensis_scaffold:8 | 2 | CH_eca_89 | 3 | 3 | 0.00000000302034 |
| Eucalyptus grandis | Chr08 | 2 | CH_egr_709 | 2 | 2 | 0.0000585274 |
| Eutrema salsugineum | scaffold_7 | 2 | CH_esa_295 | 2 | 2 | 0.000456899 |
| Fragaria x ananassa | Fvb4-4 | 2 | CH_fan_411 | 2 | 3 | 0.00016653 |
| Fragaria vesca | Fvb4 | 2 | CH_fve_329 | 2 | 3 | 0.000176725 |
| Glycine max | Gm09 | 2 | CH_gma_586 | 2 | 3 | 0.000683172 |
| Lupinus albus | Lalb_Chr03 | 2 | CH_lal_327 | 2 | 2 | 0.000314895 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 2 | CH_lsa_148 | 3 | 4 | 0.0000000158522 |
| Nelumbo nucifera | chr4 | 2 | CH_nnu_355 | 2 | 4 | 0.000261597 |
| Punica granatum | NC_045131.1 | 2 | CH_pgr_234 | 2 | 2 | 0.0000750356 |
| Prunus persica | Pp05 | 2 | CH_ppe_445 | 2 | 4 | 0.000447544 |
| Pisum sativum | chr1LG6 | 2 | CH_psa_235 | 2 | 2 | 0.0000521635 |
| Populus trichocarpa | Chr10 | 2 | CH_ptr_355 | 2 | 3 | 0.000173395 |
| Quercus lobata | 6 | 2 | CH_qlo_831 | 2 | 2 | 0.000154887 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 2 | CH_rch_653 | 2 | 4 | 0.000239182 |
| Salix brachista | GWHAAZH00000010 | 2 | CH_sbr_368 | 2 | 3 | 0.000567096 |
| Simmondsia chinensis | GWHAASQ00000025 | 2 | CH_sci_238 | 2 | 2 | 0.000255428 |
| Sechium edule | LG12 | 2 | CH_sed_269 | 2 | 2 | 0.000214026 |
| Solanum lycopersicum | SL4.0ch03 | 2 | CH_sly_181 | 3 | 6 | 0.000000413348 |
| Schrenkiella parvula | ch1-2 | 2 | CH_spa_236 | 2 | 2 | 0.000236202 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |