Functional clusters

Information

  • Type MapMan
  • Description RNA processing.organelle machinery.RNA modification

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Sequoiadendron giganteum chr6 1 CH_sgi_631 4 9 0.00000256602
Sequoiadendron giganteum chr6 2 CH_sgi_631 4 9 0.00000256602

Available child term results

Ontology identifier Description Number of clusters
16.11.3.1.1.1 RNA processing.organelle machinery.RNA modification.tRNA modification.MnmA pathway.tRNA thiouridylase 4
16.11.3.1.2 RNA processing.organelle machinery.RNA modification.tRNA modification.GTPase (TrmE) 8
16.11.3.2.1 RNA processing.organelle machinery.RNA modification.rRNA methylation.rRNA methyltransferase (CMAL) 4
16.11.3.3 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing 4
16.11.3.3.1 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.RNA editing factor (MORF) 8
16.11.3.3.2 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.RNA editing factor (ORRM) 12
16.11.3.3.3 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.RNA editing factor (OZ) 14
16.11.3.3.4.1 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (SLO1) 4
16.11.3.3.4.10 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (MEF12) 2
16.11.3.3.4.11 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (MEF13) 2
16.11.3.3.4.12 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (MEF14) 4
16.11.3.3.4.13 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (MEF18) 2
16.11.3.3.4.15 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (MEF20) 2
16.11.3.3.4.17 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (MEF22) 2
16.11.3.3.4.18 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (DYW2) 7
16.11.3.3.4.19 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (AHG11) 6
16.11.3.3.4.20 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (POCO) 30
16.11.3.3.4.21 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (MEF37) 2
16.11.3.3.4.24 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (REME2/PGL1) 2
16.11.3.3.4.27 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (OTP71) 2
16.11.3.3.4.28 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (OTP87) 6
16.11.3.3.4.29 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (MEF32) 2
16.11.3.3.4.30 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (MEF25) 4
16.11.3.3.4.32 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (DYW7) 1
16.11.3.3.4.33 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (CREF3) 4
16.11.3.3.4.36 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (DEK36) 4
16.11.3.3.4.41 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (CLB19) 2
16.11.3.3.4.43 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (AEF1) 4
16.11.3.3.4.45 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (CRR22) 5
16.11.3.3.4.47 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (ELI1) 2
16.11.3.3.4.5 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (MEF7) 4
16.11.3.3.4.52 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (OTP82) 2
16.11.3.3.4.53 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (LPA66) 2
16.11.3.3.4.55 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (ECD1) 4
16.11.3.3.4.56 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (CRR4) 2
16.11.3.3.4.57 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (OTP90) 6
16.11.3.3.4.58 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (PPME) 6
16.11.3.3.4.6 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (MEF8-group) 6
16.11.3.3.4.60 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (PDM2) 2
16.11.3.3.4.63 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (COD1) 2
16.11.3.3.4.64 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (PGN) 2
16.11.3.3.4.7 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (MEF9) 2
16.11.3.3.5 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.RNA editing co-factor (WTG1) 16
16.11.3.4.1 RNA processing.organelle machinery.RNA modification.A-to-I RNA editing.chloroplast-tRNA adenosine deaminase 6

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001