Functional clusters

Information

  • Type MapMan
  • Description RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (POCO)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr1 1 CH_acertr_161 3 9 0.000000626088
Amborella trichopoda AmTr_v1.0_scaffold00095 1 CH_atr_85 3 5 0.0000000946587
Coffea canephora chr6 1 CH_ccan_299 2 17 0.000332187
Carya illinoinensis Chr14 1 CH_cil_414 2 2 0.000185948
Citrullus lanatus CG_Chr10 1 CH_cla_105 2 2 0.0000887115
Cucumis melo chr04 1 CH_cme_95 3 6 0.000000133502
Cucumis sativus L. chr3 1 CH_csa_21 5 5 3.64263e-16
Papaver somniferum NC_039368.1 1 CH_pso_606 2 3 0.000405408
Quercus lobata 11 1 CH_qlo_960 2 2 0.000516289
Quercus lobata 4 1 CH_qlo_961 2 2 0.000516289
Salvia bowleyana GWHASIU00000001 1 CH_sbo_327 2 2 0.000136494
Sechium edule LG02 1 CH_sed_78 3 3 0.0000000763478
Sequoiadendron giganteum chr1 1 CH_sgi_1057 2 2 0.000146145
Tripterygium wilfordii NC_052252.1 1 CH_twi_276 2 2 0.000557507
Vigna mungo CM024071.1 1 CH_vmu_274 2 2 0.000193842
Acer truncatum chr1 2 CH_acertr_161 3 9 0.000000626088
Amborella trichopoda AmTr_v1.0_scaffold00095 2 CH_atr_85 3 5 0.0000000946587
Coffea canephora chr6 2 CH_ccan_299 2 17 0.000332187
Carya illinoinensis Chr14 2 CH_cil_414 2 2 0.000185948
Citrullus lanatus CG_Chr10 2 CH_cla_105 2 2 0.0000887115
Cucumis melo chr04 2 CH_cme_95 3 6 0.000000133502
Cucumis sativus L. chr3 2 CH_csa_21 5 5 3.64263e-16
Papaver somniferum NC_039368.1 2 CH_pso_606 2 3 0.000405408
Quercus lobata 11 2 CH_qlo_960 2 2 0.000516289
Quercus lobata 4 2 CH_qlo_961 2 2 0.000516289
Salvia bowleyana GWHASIU00000001 2 CH_sbo_327 2 2 0.000136494
Sechium edule LG02 2 CH_sed_78 3 3 0.0000000763478
Sequoiadendron giganteum chr1 2 CH_sgi_1057 2 2 0.000146145
Tripterygium wilfordii NC_052252.1 2 CH_twi_276 2 2 0.000557507
Vigna mungo CM024071.1 2 CH_vmu_274 2 2 0.000193842

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001