Functional clusters

Information

  • Type MapMan
  • Description RNA processing.messenger ribonucleoparticle (mRNP) export.TREX/THO mRNP trafficking complex

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Fragaria x ananassa Fvb5-1 1 CH_fan_486 4 24 0.000300044
Fragaria x ananassa Fvb5-1 2 CH_fan_486 4 24 0.000300044

Available child term results

Ontology identifier Description Number of clusters
16.10.1.1.1 RNA processing.messenger ribonucleoparticle (mRNP) export.TREX/THO mRNP trafficking complex.THO subcomplex.component THOC1/HPR1 12
16.10.1.1.2 RNA processing.messenger ribonucleoparticle (mRNP) export.TREX/THO mRNP trafficking complex.THO subcomplex.component THOC2/Tho2 19
16.10.1.1.3 RNA processing.messenger ribonucleoparticle (mRNP) export.TREX/THO mRNP trafficking complex.THO subcomplex.component THOC3/Tex1 4
16.10.1.1.4 RNA processing.messenger ribonucleoparticle (mRNP) export.TREX/THO mRNP trafficking complex.THO subcomplex.component THOC5 12
16.10.1.1.5 RNA processing.messenger ribonucleoparticle (mRNP) export.TREX/THO mRNP trafficking complex.THO subcomplex.component THOC6 6
16.10.1.1.6 RNA processing.messenger ribonucleoparticle (mRNP) export.TREX/THO mRNP trafficking complex.THO subcomplex.component THOC7 4
16.10.1.2.1 RNA processing.messenger ribonucleoparticle (mRNP) export.TREX/THO mRNP trafficking complex.mRNA export adaptor activities.mRNA-binding adaptor (ALY/Tho4) 2
16.10.1.2.2 RNA processing.messenger ribonucleoparticle (mRNP) export.TREX/THO mRNP trafficking complex.mRNA export adaptor activities.UAP56-associated factor (UIEF) 10
16.10.1.3 RNA processing.messenger ribonucleoparticle (mRNP) export.TREX/THO mRNP trafficking complex.helicase (UAP56) 8
16.10.1.4 RNA processing.messenger ribonucleoparticle (mRNP) export.TREX/THO mRNP trafficking complex.UAP56-associated mRNA export factor (MOS11) 6
16.10.1.5 RNA processing.messenger ribonucleoparticle (mRNP) export.TREX/THO mRNP trafficking complex.regulatory mRNA export factor (SDE5) 6
16.10.1.6 RNA processing.messenger ribonucleoparticle (mRNP) export.TREX/THO mRNP trafficking complex.regulatory mRNA export factor (ZC11A) 12

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001