Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p03200 Brassica napus
A03p07340 Brassica napus
Aa31LG11G13830 Aethionema arabicum
Aa31LG2G910 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.90 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.1773 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.3154 Anthoceros agrestis
Actinidia17608 Actinidia chinensis
Actinidia26272 Actinidia chinensis
Ah.10g038200 Amaranthus hybridus
Ah.16g101000 Amaranthus hybridus
AL6G26590 Arabidopsis lyrata
Aqoxy3G02935 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.6V5APJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AQQ1ZC Arachis hypogaea
AT5G15750 Arabidopsis thaliana
ATR0743G033 Amborella trichopoda
Atru.chr12.814 Acer truncatum
Atru.chr5.3325 Acer truncatum
AUR62009474 Chenopodium quinoa
AUR62023152 Chenopodium quinoa
BcaB01g05028 Brassica carinata
BcaC03g18447 Brassica carinata
BcaC04g18941 Brassica carinata
BcaNung00660 Brassica carinata
BcaNung00661 Brassica carinata
BcaNung02202 Brassica carinata
BolC1t00394H Brassica oleracea
BolC2t06718H Brassica oleracea
BolC3t13358H Brassica oleracea
BolC9t58977H Brassica oleracea
BraA02t05291Z Brassica rapa
BraA03t10058Z Brassica rapa
C02p07950 Brassica napus
C03p08530 Brassica napus
C09p61350 Brassica napus
C09p61360 Brassica napus
CAN.G497.54 Capsicum annuum
CANSAT11G0238 Cannabis sativa
CANSAT64G2552 Cannabis sativa
CARHR197580 Cardamine hirsuta
Carub.0004s0609 Capsella rubella
Carub.0006s1390 Capsella rubella
CBR_g26031 Chara braunii
Cc07_g04530 Coffea canephora
CDE10G0456 Ceratophyllum demersum
CDE10G0562 Ceratophyllum demersum
Cfa007699 Carpinus fangiana
Cfa025099 Carpinus fangiana
Ciclev10012892m.g Citrus clementina
CiPaw.06G059900 Carya illinoinensis
CiPaw.15G080600 Carya illinoinensis
ClCG07G016070 Citrullus lanatus
COL.COLO4_21291 Corchorus olitorius
Cpa.g.sc14.239 Carica papaya
Cre03.g170750 Chlamydomonas reinhardtii
CsaV3_4G010040 Cucumis sativus L.
CSS0016516 Camellia sinensis var. sinensis
CSS0037173 Camellia sinensis var. sinensis
DCAR_010215 Daucus carota
DCAR_016093 Daucus carota
Dinv33871 Davidia involucrata
Dinv34904 Davidia involucrata
Duzib150G0689 Durio zibethinus
Duzib170G0747 Durio zibethinus
ECA246G0747 Erigeron canadensis
ECA285G0012 Erigeron canadensis
EL10Ac2g04433 Beta vulgaris
Eucgr.J01412 Eucalyptus grandis
FAN02G0274 Fragaria x ananassa
FAN05G3637 Fragaria x ananassa
FAN09G0031 Fragaria x ananassa
FAN14G2017 Fragaria x ananassa
FvH4_6g46310 Fragaria vesca
Glyma.10G232700 Glycine max
Glyma.16G058000 Glycine max
Glyma.20G161600 Glycine max
Gohir.A05G003100 Gossypium hirsutum
Gohir.D05G003500 Gossypium hirsutum
Gorai.007G356600 Gossypium raimondii
Gorai.007G357000 Gossypium raimondii
Gorai.007G357200 Gossypium raimondii
Gorai.009G003100 Gossypium raimondii
GSVIVG01036537001 Vitis vinifera
HanXRQChr15g0490131 Helianthus annuus
Haze_14377 Corylus avellana
Hma1.2p1_1837F.1_g304810 Hydrangea macrophylla
HPP92_025702 Vanilla planifolia
Hund16239 Selenicereus undatus
Lalb_Chr16g0389591 Lupinus albus
Lj3g0020854 Lotus japonicus
Lj4g0017621 Lotus japonicus
Lju361A7T16 Lonicera japonica
Lju361C7T5 Lonicera japonica
Lsat_1_v5_gn_3_96881 Lactuca sativa
Manes.01G100100 Manihot esculenta
Mapoly0007s0196 Marchantia polymorpha
MBI15_g04989_MAGBIO Magnolia biondii
MBI15_g11301_MAGBIO Magnolia biondii
MCO12G368 Micromonas commoda
MD09G1075700 Malus domestica
MD17G1066400 Malus domestica
Medtr8g102530 Medicago truncatula
MELO3C000032.2 Cucumis melo
MELO3C000036.2 Cucumis melo
MELO3C001556.2 Cucumis melo
Migut.K00882 Erythranthe guttata
MSTRG.15432 Avicennia marina
Nitab4.5_0001339g0030 Nicotiana tabacum
Nitab4.5_0009887g0020 Nicotiana tabacum
Nn3g17540 Nelumbo nucifera
Nn4g23543 Nelumbo nucifera
Oeu003765.1 Olea europaea
Oeu033412.2 Olea europaea
Os04g0662100 Oryza sativa ssp. japonica
Peaxi162Scf01039g00131 Petunia axillaris
PGR042G1328 Punica granatum
PGSC0003DMG400001469 Solanum tuberosum
Phvul.007G072900 Phaseolus vulgaris
Potri.004G113600 Populus trichocarpa
Potri.017G101200 Populus trichocarpa
Pp3c13_7750 Physcomitrium patens
Prupe.3G248300 Prunus persica
Psat7g017000 Pisum sativum
PSO017G3712 Papaver somniferum
PSO198G0095 Papaver somniferum
PSO478G4867 Papaver somniferum
PSO782G4050 Papaver somniferum
QL02p065152 Quercus lobata
QL09p044371 Quercus lobata
RcHm_v2.0_Chr2g0164761 Rosa chinensis
Rhsim08G0077600 Rhododendron simsii
Sabra10G0012000 Salix brachista
Sabra17G0087000 Salix brachista
SalBow1G0807 Salvia bowleyana
Sc07g0002150 Simmondsia chinensis
Sed0009719 Sechium edule
SEGI_12415 Sequoiadendron giganteum
SGA_v2.0_scaffold148G36455 Striga asiatica
SGA_v2.0_scaffold163G37992 Striga asiatica
SHI12226 Sapria himalayana
SHI12394 Sapria himalayana
SHI40216 Sapria himalayana
SMO089G0012 Selaginella moellendorffii
SMO302G0020 Selaginella moellendorffii
Solyc02g089280.3 Solanum lycopersicum
Sopen02g034060 Solanum pennellii
Sp6g28370 Schrenkiella parvula
TAR371G0146 Trochodendron aralioides
TAR629G1609 Trochodendron aralioides
THA.LOC104820981 Tarenaya hassleriana
Thecc.01G298100 Theobroma cacao
Thecc.01G298200 Theobroma cacao
Thhalv10014794m.g Eutrema salsugineum
TPR.G23462 Trifolium pratense
TPR.G29907 Trifolium pratense
TWI36G0525 Tripterygium wilfordii
TWI36G0787 Tripterygium wilfordii
TWI75G1858 Tripterygium wilfordii
unitig_0.g1789 Utricularia gibba
vmacro18124 Vaccinium macrocarpon
VMungo0720G0545 Vigna mungo
Zm00001eb280020 Zea mays

User provided reference genes

Program Settings