Gene: AT5G15750

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G15750
  • Transcript Identifier AT5G15750.1
  • Gene Type Coding gene
  • Location Chr5 : 5141449-5142701 : positive

Gene Family Information

  • ID HOM05D004464
  • #Genes/#Species 161/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G15750.1
  • uniprot Q683D4

Descriptions

  • Description Alpha-L RNA-binding motif/Ribosomal protein S4 family protein
  • Computational description Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; FUNCTIONS IN: RNA binding, rRNA binding; LOCATED IN: cytosolic small ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S4 (InterPro:IPR001912), RNA-binding S4 (InterPro:IPR002942); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006364
IBA
Gene OntologyrRNA processing1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030515
IBA
Gene OntologysnoRNA binding1
GO:0003735
IDA
GOA Databasestructural constituent of ribosome
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0019843
IEA
GOA DatabaserRNA binding
GO:0019843
IEA
InterProrRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus
GO:0022627
IDA
GOA Databasecytosolic small ribosomal subunit
GO:0022627
HDA
Gene Ontologycytosolic small ribosomal subunit2
GO:0034457
IBA
Gene OntologyMpp10 complex1
GO:0032040
IBA
Gene Ontologysmall-subunit processome1
GO:0005840
IEA
GOA Databaseribosome

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001912 Ribosomal protein S4/S9, N-terminal
IPR002942 RNA-binding S4 domain
IPR036986 RNA-binding S4 domain superfamily
IPR022801 Ribosomal protein S4/S9
Mapman id Description
17.1.3.2.1.1.1 Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU processome.pre-40S ribosomal subunit nuclear assembly.MPP10 module.assembly factor (Imp3)