Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A07p16060 Brassica napus
A08p29530 Brassica napus
Aa31LG1G14700 Aethionema arabicum
Aa31LG7G4470 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.302 Anthoceros agrestis
Actinidia17438 Actinidia chinensis
Actinidia22970 Actinidia chinensis
Actinidia28706 Actinidia chinensis
Ah.02g119270 Amaranthus hybridus
AL1G32800 Arabidopsis lyrata
AL8G45340 Arabidopsis lyrata
Aqoxy6G02216 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.5F6K96 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.61CDGC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AR01JJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZQ3F6U Arachis hypogaea
AT1G20020 Arabidopsis thaliana
AT5G66190 Arabidopsis thaliana
ATR0582G335 Amborella trichopoda
Atru.chr3.811 Acer truncatum
AUR62003362 Chenopodium quinoa
AUR62029472 Chenopodium quinoa
AUR62044217 Chenopodium quinoa
BcaB03g12883 Brassica carinata
BcaB03g14341 Brassica carinata
BcaB03g14347 Brassica carinata
BcaB03g14410 Brassica carinata
BcaB03g14415 Brassica carinata
BcaB07g29673 Brassica carinata
BcaC03g18426 Brassica carinata
BcaC04g23117 Brassica carinata
BcaC07g39016 Brassica carinata
BolC7t42876H Brassica oleracea
BolC8t49627H Brassica oleracea
BolC9t54088H Brassica oleracea
BraA07t29334Z Brassica rapa
BraA08t34890Z Brassica rapa
BraA09t36656Z Brassica rapa
C07p23430 Brassica napus
C08p19890 Brassica napus
CAN.G1274.11 Capsicum annuum
CANSAT25G0894 Cannabis sativa
CANSAT25G1303 Cannabis sativa
CARHR020500 Cardamine hirsuta
CARHR281540 Cardamine hirsuta
Carub.0001s1955 Capsella rubella
Carub.0008s2831 Capsella rubella
Ca_28265_v3 Cicer arietinum L.
CBR_g12714 Chara braunii
CBR_g80527 Chara braunii
Cc07_g10820 Coffea canephora
CDE02G4250 Ceratophyllum demersum
CDE04G1986 Ceratophyllum demersum
Cfa006979 Carpinus fangiana
Ciclev10027108m.g Citrus clementina
CiPaw.07G059500 Carya illinoinensis
ClCG10G000720 Citrullus lanatus
COL.COLO4_21898 Corchorus olitorius
COL.COLO4_26135 Corchorus olitorius
Cpa.g.sc6.260 Carica papaya
CsaV3_3G000770 Cucumis sativus L.
CSS0004337 Camellia sinensis var. sinensis
CSS0021906 Camellia sinensis var. sinensis
CSS0038460 Camellia sinensis var. sinensis
CSS0045947 Camellia sinensis var. sinensis
DCAR_016600 Daucus carota
DCAR_021505 Daucus carota
DCAR_026004 Daucus carota
Dinv33639 Davidia involucrata
Dinv40093 Davidia involucrata
Duzib041G0757 Durio zibethinus
Duzib147G1441 Durio zibethinus
Duzib187G1458 Durio zibethinus
ECA246G2128 Erigeron canadensis
EL10Ac6g15482 Beta vulgaris
Eucgr.I02340 Eucalyptus grandis
FAN19G2613 Fragaria x ananassa
FAN23G1021 Fragaria x ananassa
FAN26G2246 Fragaria x ananassa
FAN28G1049 Fragaria x ananassa
FvH4_1g11730 Fragaria vesca
Glyma.02G047600 Glycine max
Glyma.11G077600 Glycine max
Glyma.16G127300 Glycine max
Gohir.A05G186100 Gossypium hirsutum
Gohir.A11G174700 Gossypium hirsutum
Gohir.A12G059200 Gossypium hirsutum
Gohir.D05G189000 Gossypium hirsutum
Gohir.D11G182100 Gossypium hirsutum
Gohir.D12G059600 Gossypium hirsutum
Gorai.007G193800 Gossypium raimondii
Gorai.008G062600 Gossypium raimondii
Gorai.009G194200 Gossypium raimondii
GSVIVG01009925001 Vitis vinifera
GSVIVG01018772001 Vitis vinifera
HanXRQChr15g0485591 Helianthus annuus
HanXRQChr16g0531381 Helianthus annuus
Haze_03756 Corylus avellana
Hma1.2p1_0258F.1_g104070 Hydrangea macrophylla
Hma1.2p1_0315F.1_g122190 Hydrangea macrophylla
Hma1.2p1_0956F.1_g241235 Hydrangea macrophylla
HPP92_022641 Vanilla planifolia
Hund14049 Selenicereus undatus
Hund16494 Selenicereus undatus
Lalb_Chr05g0212361 Lupinus albus
Lalb_Chr16g0377491 Lupinus albus
Lj2A470G26 Lonicera japonica
Lj4C220T3 Lonicera japonica
Lj4g0026452 Lotus japonicus
Lsat_1_v5_gn_3_73300 Lactuca sativa
Manes.01G146600 Manihot esculenta
Manes.02G105100 Manihot esculenta
Manes.18G012800 Manihot esculenta
Mapoly0062s0041 Marchantia polymorpha
MBI05_g05280_MAGBIO Magnolia biondii
MD02G1130800 Malus domestica
MD15G1244500 Malus domestica
Medtr5g022300 Medicago truncatula
MELO3C013765.2 Cucumis melo
Migut.H02168 Erythranthe guttata
MSTRG.23404 Avicennia marina
MSTRG.2719 Avicennia marina
Nitab4.5_0000864g0120 Nicotiana tabacum
Nitab4.5_0010567g0030 Nicotiana tabacum
Nn1g05928 Nelumbo nucifera
Oeu020647.1 Olea europaea
Oeu028604.1 Olea europaea
Oeu062496.1 Olea europaea
Os02g0103800 Oryza sativa ssp. japonica
Os06g0107700 Oryza sativa ssp. japonica
Peaxi162Scf00328g00108 Petunia axillaris
PGR083G0424 Punica granatum
PGR119G0812 Punica granatum
PGSC0003DMG402003567 Solanum tuberosum
Phvul.002G108000 Phaseolus vulgaris
Phvul.003G263200 Phaseolus vulgaris
Potri.005G112900 Populus trichocarpa
Potri.007G057200 Populus trichocarpa
Prupe.7G169200 Prunus persica
Psat2g154080 Pisum sativum
PSO170G3033 Papaver somniferum
PSO541G2303 Papaver somniferum
PSO675G9089 Papaver somniferum
PSO700G0245 Papaver somniferum
QL02p011783 Quercus lobata
QL06p033047 Quercus lobata
RcHm_v2.0_Chr2g0099331 Rosa chinensis
Rhsim08G0033400 Rhododendron simsii
Rhsim10G0211400 Rhododendron simsii
Sabra05G0092700 Salix brachista
Sabra07G0049200 Salix brachista
SalBow3G0828 Salvia bowleyana
SalBow3G3951 Salvia bowleyana
Sc16g0002300 Simmondsia chinensis
Sed0027169 Sechium edule
SEGI_24088 Sequoiadendron giganteum
SGA_v2.0_scaffold78G25377 Striga asiatica
SMO223G0032 Selaginella moellendorffii
Solyc02g062130.4 Solanum lycopersicum
Solyc02g083810.4 Solanum lycopersicum
Sopen02g013100 Solanum pennellii
Sopen02g028600 Solanum pennellii
Sp1g17790 Schrenkiella parvula
Sp2g30500 Schrenkiella parvula
TAR376G0248 Trochodendron aralioides
TAR628G0458 Trochodendron aralioides
THA.LOC104811414 Tarenaya hassleriana
THA.LOC104821330 Tarenaya hassleriana
Thecc.01G017500 Theobroma cacao
Thecc.08G045900 Theobroma cacao
Thhalv10004465m.g Eutrema salsugineum
Thhalv10007988m.g Eutrema salsugineum
TPR.G14414 Trifolium pratense
TWI09G0643 Tripterygium wilfordii
unitig_699.g19707 Utricularia gibba
vmacro18411 Vaccinium macrocarpon
vmacro22138 Vaccinium macrocarpon
VMungo0251G2150 Vigna mungo
VMungo1215G0819 Vigna mungo
Zm00001eb140530 Zea mays
Zm00001eb362640 Zea mays
Zm00001eb379240 Zea mays

User provided reference genes

Program Settings