Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p31380 Brassica napus
A02p43590 Brassica napus
A06p31760 Brassica napus
A10p27300 Brassica napus
Aa31LG1G16950 Aethionema arabicum
Aa31LG3G16880 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.1188 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.1192 Anthoceros agrestis
Actinidia06566 Actinidia chinensis
Actinidia12281 Actinidia chinensis
Actinidia13975 Actinidia chinensis
Actinidia20014 Actinidia chinensis
Actinidia22480 Actinidia chinensis
Ah.03g143670 Amaranthus hybridus
Ah.09g229460 Amaranthus hybridus
Ah.14g084410 Amaranthus hybridus
AL6G20770 Arabidopsis lyrata
AL8G42460 Arabidopsis lyrata
Aqoxy6G00785 Aquilegia oxysepala
Aqoxy6G02791 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.07543H Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IJVD3H Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YB3T89 Arachis hypogaea
AT5G10270 Arabidopsis thaliana
AT5G64960 Arabidopsis thaliana
ATR0763G285 Amborella trichopoda
Atru.chr4.3079 Acer truncatum
Atru.chr4.51 Acer truncatum
AUR62002003 Chenopodium quinoa
AUR62003799 Chenopodium quinoa
AUR62028402 Chenopodium quinoa
AUR62039760 Chenopodium quinoa
BcaB04g20428 Brassica carinata
BcaB07g29766 Brassica carinata
BcaB08g37122 Brassica carinata
BcaC01g02729 Brassica carinata
BcaC03g18295 Brassica carinata
BcaC04g19317 Brassica carinata
BolC1t03952H Brassica oleracea
BolC2t12439H Brassica oleracea
BolC3t18382H Brassica oleracea
BolC9t59486H Brassica oleracea
BraA01t03263Z Brassica rapa
BraA02t09286Z Brassica rapa
BraA06t26110Z Brassica rapa
BraA10t44781Z Brassica rapa
C01p39970 Brassica napus
C02p63710 Brassica napus
C03p61210 Brassica napus
C09p67150 Brassica napus
CAN.G18.9 Capsicum annuum
CAN.G65.209 Capsicum annuum
CANSAT01G2864 Cannabis sativa
CANSAT54G2842 Cannabis sativa
CARHR203030 Cardamine hirsuta
CARHR293810 Cardamine hirsuta
Carub.0006s0873 Capsella rubella
Carub.0008s2579 Capsella rubella
Ca_04724_v3 Cicer arietinum L.
CBR_g17928 Chara braunii
CBR_g49363 Chara braunii
Cc01_g07370 Coffea canephora
Cc01_g07380 Coffea canephora
Cc07_g15140 Coffea canephora
CDE04G3298 Ceratophyllum demersum
CDE10G0040 Ceratophyllum demersum
CDE10G0652 Ceratophyllum demersum
Cfa002654 Carpinus fangiana
Ciclev10025386m.g Citrus clementina
CiPaw.03G142400 Carya illinoinensis
CiPaw.04G100300 Carya illinoinensis
ClCG02G024190 Citrullus lanatus
ClCG10G014100 Citrullus lanatus
COL.COLO4_16719 Corchorus olitorius
COL.COLO4_19526 Corchorus olitorius
Cpa.g.sc213.10 Carica papaya
Cpa.g.sc213.12 Carica papaya
Cpa.g.sc2858.1 Carica papaya
Cpa.g.sc34.212 Carica papaya
Cre08.g385850 Chlamydomonas reinhardtii
CsaV3_3G042560 Cucumis sativus L.
CsaV3_4G017320 Cucumis sativus L.
CSS0001448 Camellia sinensis var. sinensis
CSS0029019 Camellia sinensis var. sinensis
CSS0036261 Camellia sinensis var. sinensis
DCAR_014217 Daucus carota
DCAR_014220 Daucus carota
Dinv04285 Davidia involucrata
Dinv21902 Davidia involucrata
Duzib068G1001 Durio zibethinus
Duzib205G0192 Durio zibethinus
ECA232G3123 Erigeron canadensis
ECA232G3278 Erigeron canadensis
ECA233G1091 Erigeron canadensis
EL10Ac4g10050 Beta vulgaris
EL10Ac6g14309 Beta vulgaris
EL10Ac6g14610 Beta vulgaris
EL10Ac6g15112 Beta vulgaris
EL10Ac8g18878 Beta vulgaris
Eucgr.I00437 Eucalyptus grandis
Eucgr.J00650 Eucalyptus grandis
FAN07G0194 Fragaria x ananassa
FAN11G1217 Fragaria x ananassa
FAN16G1484 Fragaria x ananassa
FAN17G1100 Fragaria x ananassa
FAN19G0941 Fragaria x ananassa
FAN21G3593 Fragaria x ananassa
FAN23G2188 Fragaria x ananassa
FAN26G0180 Fragaria x ananassa
FAN28G2260 Fragaria x ananassa
FvH4_1g20740 Fragaria vesca
FvH4_3g16880 Fragaria vesca
FvH4_4g11370 Fragaria vesca
Glyma.02G276000 Glycine max
Glyma.14G039900 Glycine max
Glyma.20G048000 Glycine max
Gohir.A08G147200 Gossypium hirsutum
Gohir.D08G168400 Gossypium hirsutum
Gorai.004G175700 Gossypium raimondii
GSVIVG01002637001 Vitis vinifera
GSVIVG01004861001 Vitis vinifera
GSVIVG01037432001 Vitis vinifera
HanXRQChr11g0322641 Helianthus annuus
HanXRQChr15g0469221 Helianthus annuus
Haze_24924 Corylus avellana
Hma1.2p1_0308F.1_g120240 Hydrangea macrophylla
Hma1.2p1_1428F.1_g282931 Hydrangea macrophylla
Hma1.2p1_1711F.1_g298740 Hydrangea macrophylla
Hma1.2p1_1841F.1_g304980 Hydrangea macrophylla
HPP92_018823 Vanilla planifolia
Hund07402 Selenicereus undatus
Hund16291 Selenicereus undatus
Hund21946 Selenicereus undatus
Lalb_Chr10g0106011 Lupinus albus
Lalb_Chr17g0347661 Lupinus albus
Lj2A940T49 Lonicera japonica
Lj2A947T46 Lonicera japonica
Lj2C549T2 Lonicera japonica
Lj6g0002935 Lotus japonicus
LjContig00564g0016380 Lotus japonicus
Lsat_1_v5_gn_0_33100 Lactuca sativa
Lsat_1_v5_gn_5_65380 Lactuca sativa
Manes.12G153600 Manihot esculenta
Mapoly0027s0185 Marchantia polymorpha
Mapoly0124s0024 Marchantia polymorpha
MBI02_g35767_MAGBIO Magnolia biondii
MBI05_g19346_MAGBIO Magnolia biondii
MCO01G239 Micromonas commoda
MD04G1037600 Malus domestica
MD15G1318300 Malus domestica
Medtr1g087310 Medicago truncatula
Medtr3g040520 Medicago truncatula
Medtr3g040810 Medicago truncatula
MELO3C009967.2 Cucumis melo
MELO3C014702.2 Cucumis melo
Migut.H02355 Erythranthe guttata
Migut.N02407 Erythranthe guttata
MSTRG.12418 Avicennia marina
MSTRG.23346 Avicennia marina
MSTRG.23347 Avicennia marina
Nitab4.5_0000083g0230 Nicotiana tabacum
Nitab4.5_0000271g0240 Nicotiana tabacum
Nitab4.5_0001929g0060 Nicotiana tabacum
Nitab4.5_0006265g0030 Nicotiana tabacum
Nn2g14695 Nelumbo nucifera
Nn2g14696 Nelumbo nucifera
Nn3g18501 Nelumbo nucifera
Nn5g30110 Nelumbo nucifera
Oeu015890.1 Olea europaea
Oeu026654.2 Olea europaea
Oeu053548.1 Olea europaea
Oeu058844.1 Olea europaea
Os01g0958000 Oryza sativa ssp. japonica
Os05g0389700 Oryza sativa ssp. japonica
Os08g0453800 Oryza sativa ssp. japonica
Peaxi162Scf00526g00822 Petunia axillaris
Peaxi162Scf01101g00007 Petunia axillaris
PGR119G0247 Punica granatum
PGR119G0324 Punica granatum
PGSC0003DMG400001882 Solanum tuberosum
PGSC0003DMG400005947 Solanum tuberosum
Phvul.006G020500 Phaseolus vulgaris
Phvul.008G205500 Phaseolus vulgaris
Potri.006G024600 Populus trichocarpa
Potri.012G003700 Populus trichocarpa
Pp3c18_12930 Physcomitrium patens
Pp3c21_11030 Physcomitrium patens
Pp3c22_9780 Physcomitrium patens
PRCOL_00003818 Prasinoderma coloniale
Prupe.1G186900 Prunus persica
Prupe.6G187600 Prunus persica
Psat2g073000 Pisum sativum
PSO210G5155 Papaver somniferum
PSO447G0390 Papaver somniferum
PSO673G0040 Papaver somniferum
PSO675G5561 Papaver somniferum
PSO724G1085 Papaver somniferum
QL06p049339 Quercus lobata
RcHm_v2.0_Chr2g0113361 Rosa chinensis
RcHm_v2.0_Chr2g0113381 Rosa chinensis
RcHm_v2.0_Chr4g0407881 Rosa chinensis
RcHm_v2.0_Chr5g0006861 Rosa chinensis
RcHm_v2.0_Chr5g0028131 Rosa chinensis
Rhsim01G0195900 Rhododendron simsii
Rhsim10G0163300 Rhododendron simsii
Sabra06G0018100 Salix brachista
Sabra12G0018600 Salix brachista
SalBow3G2709 Salvia bowleyana
Sc06g0004850 Simmondsia chinensis
Sc16g0010790 Simmondsia chinensis
Sed0008748 Sechium edule
Sed0026973 Sechium edule
SEGI_11471 Sequoiadendron giganteum
SEGI_13097 Sequoiadendron giganteum
SEGI_20217 Sequoiadendron giganteum
SEGI_20509 Sequoiadendron giganteum
SGA_v2.0_scaffold54G19502 Striga asiatica
SGA_v2.0_scaffold79G25528 Striga asiatica
SMO356G0704 Selaginella moellendorffii
Solyc04g056280.4 Solanum lycopersicum
Solyc06g073630.3 Solanum lycopersicum
Sopen04g025170 Solanum pennellii
Sopen06g030040 Solanum pennellii
Sp2g28040 Schrenkiella parvula
Sp2g28050 Schrenkiella parvula
Sp6g33160 Schrenkiella parvula
TAR381G1381 Trochodendron aralioides
TAR625G1469 Trochodendron aralioides
TAR633G2569 Trochodendron aralioides
TAR633G2722 Trochodendron aralioides
THA.LOC104798934 Tarenaya hassleriana
THA.LOC104801719 Tarenaya hassleriana
THA.LOC104814134 Tarenaya hassleriana
Thecc.03G323000 Theobroma cacao
Thhalv10004018m.g Eutrema salsugineum
Thhalv10013327m.g Eutrema salsugineum
Thhalv10023419m.g Eutrema salsugineum
TPR.G11933 Trifolium pratense
TPR.G34633 Trifolium pratense
TWI53G0036 Tripterygium wilfordii
TWI74G1406 Tripterygium wilfordii
TWI79G0628 Tripterygium wilfordii
unitig_22.g6175 Utricularia gibba
unitig_27.g25355 Utricularia gibba
vmacro12960 Vaccinium macrocarpon
vmacro14285 Vaccinium macrocarpon
Zm00001eb040540 Zea mays
Zm00001eb055820 Zea mays
Zm00001eb103870 Zea mays
Zm00001eb215750 Zea mays
Zm00001eb367750 Zea mays

User provided reference genes

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