Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p22590 Brassica napus
A07p22720 Brassica napus
A09p48940 Brassica napus
Aa31LG10G10930 Aethionema arabicum
Aa31LG5G19420 Aethionema arabicum
Actinidia00954 Actinidia chinensis
Actinidia13943 Actinidia chinensis
Actinidia29706 Actinidia chinensis
Actinidia37333 Actinidia chinensis
Ah.16g103630 Amaranthus hybridus
AL4G37860 Arabidopsis lyrata
AL4G37870 Arabidopsis lyrata
AL4G37880 Arabidopsis lyrata
AL5G37270 Arabidopsis lyrata
Aqoxy2G00851 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.GWHQ4I Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KF1DHC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M4JWEG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UX09RC Arachis hypogaea
AT2G40150 Arabidopsis thaliana
AT2G40160 Arabidopsis thaliana
AT3G55990 Arabidopsis thaliana
ATR0681G336 Amborella trichopoda
Atru.chr12.60 Acer truncatum
Atru.chr12.62 Acer truncatum
Atru.chr12.65 Acer truncatum
Atru.chr12.66 Acer truncatum
Atru.chr5.1720 Acer truncatum
AUR62012266 Chenopodium quinoa
AUR62022901 Chenopodium quinoa
BcaB01g00043 Brassica carinata
BcaB01g03563 Brassica carinata
BcaB01g03565 Brassica carinata
BcaB01g03566 Brassica carinata
BcaB02g07670 Brassica carinata
BcaB04g19075 Brassica carinata
BcaC01g03589 Brassica carinata
BcaC01g05424 Brassica carinata
BcaC01g05425 Brassica carinata
BcaC07g39918 Brassica carinata
BcaC07g39920 Brassica carinata
BcaC08g44758 Brassica carinata
BolC3t15063H Brassica oleracea
BolC6t37497H Brassica oleracea
BolC8t50752H Brassica oleracea
BraA03t11485Z Brassica rapa
BraA07t29941Z Brassica rapa
BraA09t40349Z Brassica rapa
C03p26780 Brassica napus
C06p23240 Brassica napus
C08p31310 Brassica napus
CAN.G1006.5 Capsicum annuum
CAN.G536.21 Capsicum annuum
CANSAT56G3058 Cannabis sativa
CARHR135160 Cardamine hirsuta
CARHR135170 Cardamine hirsuta
CARHR135190 Cardamine hirsuta
CARHR166070 Cardamine hirsuta
Carub.0004s2236 Capsella rubella
Carub.0004s2237 Capsella rubella
Carub.0005s2273 Capsella rubella
Ca_05973_v3 Cicer arietinum L.
Cc02_g06330 Coffea canephora
CDE04G3790 Ceratophyllum demersum
CDE06G1571 Ceratophyllum demersum
CDE12G0567 Ceratophyllum demersum
Cfa001306 Carpinus fangiana
Ciclev10031403m.g Citrus clementina
Ciclev10033614m.g Citrus clementina
CiPaw.01G299900 Carya illinoinensis
CiPaw.02G193400 Carya illinoinensis
ClCG11G006080 Citrullus lanatus
COL.COLO4_25747 Corchorus olitorius
COL.COLO4_25748 Corchorus olitorius
COL.COLO4_25749 Corchorus olitorius
COL.COLO4_25750 Corchorus olitorius
COL.COLO4_25751 Corchorus olitorius
Cpa.g.c46986 Carica papaya
Cpa.g.sc19.162 Carica papaya
Cpa.g.sc19.163 Carica papaya
Cpa.g.sc19.165 Carica papaya
CsaV3_6G001880 Cucumis sativus L.
CSS0003646 Camellia sinensis var. sinensis
CSS0044171 Camellia sinensis var. sinensis
DCAR_011822 Daucus carota
Dinv05553 Davidia involucrata
Dinv08441 Davidia involucrata
Dinv10612 Davidia involucrata
Dinv21744 Davidia involucrata
Duzib106G0301 Durio zibethinus
Duzib114G0784 Durio zibethinus
Duzib114G0954 Durio zibethinus
Duzib114G1031 Durio zibethinus
Duzib128G0818 Durio zibethinus
ECA232G2536 Erigeron canadensis
EL10Ac2g04848 Beta vulgaris
Eucgr.J00196 Eucalyptus grandis
FAN01G0145 Fragaria x ananassa
FAN03G0221 Fragaria x ananassa
FAN06G3320 Fragaria x ananassa
FAN10G1989 Fragaria x ananassa
FvH4_7g24620 Fragaria vesca
Glyma.02G258000 Glycine max
Glyma.14G058500 Glycine max
Glyma.18G026200 Glycine max
Gohir.A04G093200 Gossypium hirsutum
Gohir.A04G093300 Gossypium hirsutum
Gohir.A05G330200 Gossypium hirsutum
Gohir.A05G330300 Gossypium hirsutum
Gohir.A05G330400 Gossypium hirsutum
Gohir.A05G330500 Gossypium hirsutum
Gohir.A13G014700 Gossypium hirsutum
Gohir.D04G068600 Gossypium hirsutum
Gohir.D04G068700 Gossypium hirsutum
Gohir.D04G069200 Gossypium hirsutum
Gohir.D04G069300 Gossypium hirsutum
Gohir.D04G132500 Gossypium hirsutum
Gohir.D04G132600 Gossypium hirsutum
Gohir.D13G015900 Gossypium hirsutum
Gorai.012G077200 Gossypium raimondii
Gorai.012G077300 Gossypium raimondii
Gorai.012G077500 Gossypium raimondii
Gorai.012G077600 Gossypium raimondii
Gorai.012G116200 Gossypium raimondii
Gorai.012G116300 Gossypium raimondii
Gorai.013G017400 Gossypium raimondii
GSVIVG01032800001 Vitis vinifera
HanXRQChr07g0203221 Helianthus annuus
HanXRQChr07g0203311 Helianthus annuus
HanXRQChr09g0251861 Helianthus annuus
HanXRQChr14g0459321 Helianthus annuus
Haze_17239 Corylus avellana
Hma1.2p1_0281F.1_g113240 Hydrangea macrophylla
Hma1.2p1_0523F.1_g172210 Hydrangea macrophylla
HPP92_012040 Vanilla planifolia
HPP92_019784 Vanilla planifolia
Hund13876 Selenicereus undatus
Hund15920 Selenicereus undatus
Lalb_Chr04g0250521 Lupinus albus
Lalb_Chr08g0231671 Lupinus albus
Lalb_Chr17g0346831 Lupinus albus
Lj1C958T4 Lonicera japonica
Lj6g0004229 Lotus japonicus
Lj8A65T45 Lonicera japonica
LjContig00357g0018485 Lotus japonicus
Lsat_1_v5_gn_2_124521 Lactuca sativa
Lsat_1_v5_gn_6_62841 Lactuca sativa
Lsat_1_v5_gn_9_62180 Lactuca sativa
Lsat_1_v5_gn_9_62200 Lactuca sativa
Manes.07G131000 Manihot esculenta
Manes.07G131100 Manihot esculenta
Manes.10G010800 Manihot esculenta
Manes.10G010900 Manihot esculenta
Manes.10G011000 Manihot esculenta
Manes.10G011100 Manihot esculenta
MBI03_g07325_MAGBIO Magnolia biondii
MD01G1154500 Malus domestica
MD07G1223300 Malus domestica
Medtr3g070900 Medicago truncatula
Medtr5g082880 Medicago truncatula
MELO3C008304.2 Cucumis melo
Migut.F00671 Erythranthe guttata
Migut.F01401 Erythranthe guttata
Migut.J00121 Erythranthe guttata
MSTRG.18986 Avicennia marina
MSTRG.200 Avicennia marina
Nitab4.5_0000487g0010 Nicotiana tabacum
Nitab4.5_0000683g0100 Nicotiana tabacum
Nitab4.5_0000797g0140 Nicotiana tabacum
Nitab4.5_0002701g0070 Nicotiana tabacum
Nitab4.5_0002784g0020 Nicotiana tabacum
Nitab4.5_0003369g0010 Nicotiana tabacum
Nitab4.5_0003391g0020 Nicotiana tabacum
Nitab4.5_0004629g0030 Nicotiana tabacum
Nn2g10883 Nelumbo nucifera
Nn2g13158 Nelumbo nucifera
Oeu004689.1 Olea europaea
Oeu038740.1 Olea europaea
Oeu049668.1 Olea europaea
Os01g0830700 Oryza sativa ssp. japonica
Os03g0291800 Oryza sativa ssp. japonica
Os05g0354400 Oryza sativa ssp. japonica
Os05g0470000 Oryza sativa ssp. japonica
Os07g0693600 Oryza sativa ssp. japonica
Os11g0104800 Oryza sativa ssp. japonica
Os12g0104700 Oryza sativa ssp. japonica
Peaxi162Scf00284g01038 Petunia axillaris
Peaxi162Scf00284g01039 Petunia axillaris
Peaxi162Scf01208g00152 Petunia axillaris
Peaxi162Scf52871g00007 Petunia axillaris
PGR044G0676 Punica granatum
PGR044G2745 Punica granatum
PGR142G2737 Punica granatum
PGSC0003DMG400024237 Solanum tuberosum
PGSC0003DMG400027728 Solanum tuberosum
PGSC0003DMG400037865 Solanum tuberosum
PGSC0003DMG402027175 Solanum tuberosum
Phvul.008G223000 Phaseolus vulgaris
Potri.008G069900 Populus trichocarpa
Potri.008G070000 Populus trichocarpa
Potri.008G070101 Populus trichocarpa
Potri.008G070200 Populus trichocarpa
Potri.010G187300 Populus trichocarpa
Potri.010G187401 Populus trichocarpa
Potri.010G187500 Populus trichocarpa
Potri.010G187600 Populus trichocarpa
Prupe.2G251500 Prunus persica
Prupe.2G251900 Prunus persica
Psat2g032040 Pisum sativum
Psat5g129840 Pisum sativum
PSO339G4848 Papaver somniferum
PSO801G0068 Papaver somniferum
QL04p076622 Quercus lobata
QL08p063329 Quercus lobata
RcHm_v2.0_Chr1g0367551 Rosa chinensis
RcHm_v2.0_Chr1g0370451 Rosa chinensis
Rhsim09G0177800 Rhododendron simsii
Sabra08G0051500 Salix brachista
Sabra08G0051600 Salix brachista
Sabra10G0144500 Salix brachista
SalBow5G2416 Salvia bowleyana
SalBow5G5240 Salvia bowleyana
SalBow6G0012 Salvia bowleyana
Sc11g0005120 Simmondsia chinensis
Sed0008188 Sechium edule
Sed0013909 Sechium edule
SEGI_05921 Sequoiadendron giganteum
SGA_v2.0_scaffold44G16685 Striga asiatica
SGA_v2.0_scaffold60G20989 Striga asiatica
Solyc03g096030.3 Solanum lycopersicum
Solyc05g052540.2 Solanum lycopersicum
Solyc06g051350.4 Solanum lycopersicum
Sopen03g026110 Solanum pennellii
Sopen06g017320 Solanum pennellii
Sp4g22500 Schrenkiella parvula
Sp4g22510 Schrenkiella parvula
Sp5g06540 Schrenkiella parvula
TAR623G0232 Trochodendron aralioides
TAR633G1146 Trochodendron aralioides
THA.LOC104810106 Tarenaya hassleriana
THA.LOC104810108 Tarenaya hassleriana
THA.LOC104824321 Tarenaya hassleriana
Thecc.10G014600 Theobroma cacao
Thecc.10G014700 Theobroma cacao
Thecc.10G014800 Theobroma cacao
Thhalv10005901m.g Eutrema salsugineum
Thhalv10016697m.g Eutrema salsugineum
Thhalv10016723m.g Eutrema salsugineum
TPR.G11206 Trifolium pratense
TPR.G38460 Trifolium pratense
TPR.G40506 Trifolium pratense
TWI09G0697 Tripterygium wilfordii
TWI09G1090 Tripterygium wilfordii
TWI09G1419 Tripterygium wilfordii
TWI09G1454 Tripterygium wilfordii
TWI73G0103 Tripterygium wilfordii
unitig_0.g2176 Utricularia gibba
vmacro10036 Vaccinium macrocarpon
VMungo0647G1149 Vigna mungo
VMungo1383G1167 Vigna mungo
Zm00001eb013440 Zea mays
Zm00001eb030720 Zea mays
Zm00001eb094300 Zea mays
Zm00001eb149000 Zea mays
Zm00001eb286090 Zea mays
Zm00001eb331550 Zea mays
Zm00001eb347490 Zea mays
Zm00001eb404820 Zea mays

User provided reference genes

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