Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p42340 Brassica napus
Aa31LG11G1160 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.3244 Anthoceros agrestis
Actinidia37765 Actinidia chinensis
Ah.10g027310 Amaranthus hybridus
Ah.10g029000 Amaranthus hybridus
Ah.11g048210 Amaranthus hybridus
Ah.15g098860 Amaranthus hybridus
AL1G45060 Arabidopsis lyrata
AL1G60620 Arabidopsis lyrata
AL2G20520 Arabidopsis lyrata
AL2G21760 Arabidopsis lyrata
Aqoxy1G01867 Aquilegia oxysepala
Aqoxy4G00923 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2ECS7R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.4C6UH4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.4LVT1K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7B1PRD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.900JYR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MT7PBJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RN4U32 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RXW997 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W16VAI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZAYD4R Arachis hypogaea
AT1G52370 Arabidopsis thaliana
AT4G28360 Arabidopsis thaliana
ATCG00810 Arabidopsis thaliana
ATR0730G052 Amborella trichopoda
Atru.chr8.1304 Acer truncatum
AUR62015091 Chenopodium quinoa
AUR62017549 Chenopodium quinoa
BcaB02g09651 Brassica carinata
BcaB07g29840 Brassica carinata
BcaC01g02477 Brassica carinata
BcaC03g18154 Brassica carinata
BcaC03g18159 Brassica carinata
BcaC04g23410 Brassica carinata
BolC2t12279H Brassica oleracea
BolC3t18692H Brassica oleracea
BolC7t41707H Brassica oleracea
BolC9t56906H Brassica oleracea
BolSC101t60211H Brassica oleracea
BolSC29t60613H Brassica oleracea
BolSC35t60673H Brassica oleracea
BraA02t09164Z Brassica rapa
BraA06t25868Z Brassica rapa
BraSC143t45639Z Brassica rapa
C02p62220 Brassica napus
C03p64380 Brassica napus
C09p40110 Brassica napus
CAN.G114.8 Capsicum annuum
CAN.G1237.44 Capsicum annuum
CANSAT35G1644 Cannabis sativa
CARHR060900 Cardamine hirsuta
CARHR141570 Cardamine hirsuta
CARHR236070 Cardamine hirsuta
Carub.0001s4137 Capsella rubella
Carub.0007s1240 Capsella rubella
Ca_04123_v3 Cicer arietinum L.
Ca_12342_v3 Cicer arietinum L.
CBR_g23715 Chara braunii
Cc06_g06830 Coffea canephora
CDE02G0431 Ceratophyllum demersum
CDE02G4432 Ceratophyllum demersum
Cfa007862 Carpinus fangiana
Cfa020087 Carpinus fangiana
Ciclev10005921m.g Citrus clementina
Ciclev10013709m.g Citrus clementina
CiPaw.03G067300 Carya illinoinensis
CiPaw.08G072600 Carya illinoinensis
CiPaw.11G073000 Carya illinoinensis
CiPaw.15G185300 Carya illinoinensis
ClCG01G012560 Citrullus lanatus
ClCG04G000500 Citrullus lanatus
COL.COLO4_00938 Corchorus olitorius
COL.COLO4_29520 Corchorus olitorius
Cpa.g.sc17.105 Carica papaya
Cre05.g242950 Chlamydomonas reinhardtii
Cre13.g580850 Chlamydomonas reinhardtii
CsaV3_1G014590 Cucumis sativus L.
CSS0008111 Camellia sinensis var. sinensis
CSS0023244 Camellia sinensis var. sinensis
DCAR_013448 Daucus carota
DCAR_032525 Daucus carota
Dinv25067 Davidia involucrata
Duzib093G0527 Durio zibethinus
Duzib128G1254 Durio zibethinus
Duzib275G0002 Durio zibethinus
ECA234G3695 Erigeron canadensis
EL10Ac7g16269 Beta vulgaris
Eucgr.A01255 Eucalyptus grandis
Eucgr.H00426 Eucalyptus grandis
FAN02G0475 Fragaria x ananassa
FAN05G3201 Fragaria x ananassa
FAN09G4709 Fragaria x ananassa
FAN12G0168 Fragaria x ananassa
FAN12G2504 Fragaria x ananassa
FAN12G3167 Fragaria x ananassa
FAN14G5955 Fragaria x ananassa
FAN17G2484 Fragaria x ananassa
FAN22G0547 Fragaria x ananassa
FvH4_4g00560 Fragaria vesca
FvH4_6g20730 Fragaria vesca
Glyma.03G011366 Glycine max
Glyma.05G001100 Glycine max
Glyma.09G264400 Glycine max
Glyma.15G277200 Glycine max
Glyma.18G227500 Glycine max
Glyma.19G001100 Glycine max
Gohir.1Z049366 Gossypium hirsutum
Gohir.1Z049734 Gossypium hirsutum
Gohir.A01G200200 Gossypium hirsutum
Gohir.A04G116550 Gossypium hirsutum
Gohir.A09G132800 Gossypium hirsutum
Gohir.A12G024432 Gossypium hirsutum
Gohir.D01G102177 Gossypium hirsutum
Gohir.D01G190300 Gossypium hirsutum
Gohir.D09G129100 Gossypium hirsutum
Gorai.001G190500 Gossypium raimondii
Gorai.002G234000 Gossypium raimondii
Gorai.006G147800 Gossypium raimondii
Gorai.009G325200 Gossypium raimondii
GSVIVG01022501001 Vitis vinifera
HanXRQChr00c0349g0573961 Helianthus annuus
HanXRQChr00c0394g0574521 Helianthus annuus
HanXRQChr00c0593g0576411 Helianthus annuus
HanXRQChr02g0037261 Helianthus annuus
HanXRQChr05g0152531 Helianthus annuus
HanXRQChr08g0209901 Helianthus annuus
HanXRQChr11g0321141 Helianthus annuus
HanXRQChr11g0327011 Helianthus annuus
HanXRQChr11g0345141 Helianthus annuus
HanXRQChr13g0402911 Helianthus annuus
HanXRQChr16g0500141 Helianthus annuus
HanXRQChr16g0503671 Helianthus annuus
HanXRQChr17g0562561 Helianthus annuus
Haze_14208 Corylus avellana
Haze_20104 Corylus avellana
Hma1.2p1_0104F.1_g050125 Hydrangea macrophylla
Hma1.2p1_0192F.1_g083740 Hydrangea macrophylla
Hma1.2p1_0247F.1_g101834 Hydrangea macrophylla
Hma1.2p1_0298F.1_g117736 Hydrangea macrophylla
Hma1.2p1_0818F.1_g223301 Hydrangea macrophylla
Hma1.2p1_2082F.1_g313570 Hydrangea macrophylla
HPP92_007212 Vanilla planifolia
HPP92_017694 Vanilla planifolia
Hund20962 Selenicereus undatus
Lalb_Chr03g0038431 Lupinus albus
Lalb_Chr05g0221411 Lupinus albus
Lalb_Chr16g0386841 Lupinus albus
Lj1g0008959 Lotus japonicus
Lj2C1234G17 Lonicera japonica
Lj2g0018876 Lotus japonicus
Lj2g0021502 Lotus japonicus
Lj2P1239T81 Lonicera japonica
Lj3A736G17 Lonicera japonica
Lju5009P0T59 Lonicera japonica
Lsat_1_v5_gn_4_40160 Lactuca sativa
Lsat_1_v5_gn_5_168080 Lactuca sativa
Lsat_1_v5_gn_5_50481 Lactuca sativa
Manes.08G035900 Manihot esculenta
Mapoly0001s0445 Marchantia polymorpha
MBI19_g30302_MAGBIO Magnolia biondii
MCO07G289 Micromonas commoda
MCO09G075 Micromonas commoda
MD03G1130200 Malus domestica
MD06G1011100 Malus domestica
MD12G1043300 Malus domestica
MD12G1043400 Malus domestica
MD14G1042400 Malus domestica
Medtr1g040020 Medicago truncatula
Medtr7g100410 Medicago truncatula
MELO3C004760.2 Cucumis melo
Migut.D01326 Erythranthe guttata
Migut.D01369 Erythranthe guttata
Migut.L01852 Erythranthe guttata
Migut.O00931 Erythranthe guttata
MSTRG.10419 Avicennia marina
Nitab4.5_0000082g0420 Nicotiana tabacum
Nitab4.5_0000317g0150 Nicotiana tabacum
Nitab4.5_0000382g0100 Nicotiana tabacum
Nitab4.5_0000735g0070 Nicotiana tabacum
Nitab4.5_0004430g0050 Nicotiana tabacum
Nitab4.5_0004697g0040 Nicotiana tabacum
Nitab4.5_0007356g0020 Nicotiana tabacum
Nitab4.5_0009392g0020 Nicotiana tabacum
Nitab4.5_0014391g0010 Nicotiana tabacum
Nitab4.5_0021549g0010 Nicotiana tabacum
Nn070s42374 Nelumbo nucifera
Nn2g14387 Nelumbo nucifera
Nn4g25227 Nelumbo nucifera
Oeu020171.1 Olea europaea
Oeu054717.1 Olea europaea
Oeu060398.1 Olea europaea
Os01g0616500 Oryza sativa ssp. japonica
Os07g0273150 Oryza sativa ssp. japonica
Os12g0488300 Oryza sativa ssp. japonica
Peaxi162Scf00002g03712 Petunia axillaris
Peaxi162Scf00362g00547 Petunia axillaris
PGR111G0094 Punica granatum
PGR142G0313 Punica granatum
PGSC0003DMG400034098 Solanum tuberosum
Phvul.004G001400 Phaseolus vulgaris
Phvul.008G070600 Phaseolus vulgaris
Phvul.008G070900 Phaseolus vulgaris
Phvul.008G071600 Phaseolus vulgaris
Phvul.008G172100 Phaseolus vulgaris
Phvul.010G107200 Phaseolus vulgaris
Potri.016G067100 Populus trichocarpa
Pp3c8_16210 Physcomitrium patens
PRCOL_00001286 Prasinoderma coloniale
Prupe.2G035300 Prunus persica
Prupe.7G027600 Prunus persica
Prupe.7G091500 Prunus persica
Psat1g052200 Pisum sativum
Psat6g101760 Pisum sativum
Psat6g152720 Pisum sativum
PSO548G0035 Papaver somniferum
PSO675G1782 Papaver somniferum
PSO732G0769 Papaver somniferum
QL02p048586 Quercus lobata
QL03p055008 Quercus lobata
QL07p027111 Quercus lobata
RcHm_v2.0_Chr1g0329561 Rosa chinensis
RcHm_v2.0_Chr3g0476631 Rosa chinensis
RcHm_v2.0_Chr4g0386011 Rosa chinensis
RcHm_v2.0_Chr5g0025841 Rosa chinensis
RcHm_v2.0_Chr6g0286361 Rosa chinensis
RcHm_v2.0_Chr7g0223381 Rosa chinensis
RcHm_v2.0_CPg0501841 Rosa chinensis
Rhsim03G0060300 Rhododendron simsii
Rhsim03G0060600 Rhododendron simsii
Rhsim03G0061200 Rhododendron simsii
Rhsim03G0061600 Rhododendron simsii
Rhsim03G0061700 Rhododendron simsii
RhsimUnG0112900 Rhododendron simsii
RhsimUnG0113000 Rhododendron simsii
RhsimUnG0113200 Rhododendron simsii
Sabra16G0068400 Salix brachista
SalBow5G1795 Salvia bowleyana
Sc06g0010610 Simmondsia chinensis
Sed0005264 Sechium edule
Sed0019356 Sechium edule
SEGI_26891 Sequoiadendron giganteum
SGA_v2.0_scaffold392G50675 Striga asiatica
SGA_v2.0_scaffold907G53717 Striga asiatica
SHI07013 Sapria himalayana
SMO086G0008 Selaginella moellendorffii
SMO228G0153 Selaginella moellendorffii
Solyc03g044440.2 Solanum lycopersicum
Solyc04g017680.3 Solanum lycopersicum
Sopen03g008580 Solanum pennellii
Sopen04g008760 Solanum pennellii
Sp2g25660 Schrenkiella parvula
TAR623G1175 Trochodendron aralioides
THA.LOC109116862 Tarenaya hassleriana
Thecc.05G108200 Theobroma cacao
TPR.G22135 Trifolium pratense
TPR.G30221 Trifolium pratense
TWI53G0181 Tripterygium wilfordii
TWI74G0953 Tripterygium wilfordii
unitig_8.g3554 Utricularia gibba
vmacro07504 Vaccinium macrocarpon
VMungo0464G0334 Vigna mungo
VMungo1383G3620 Vigna mungo
Zm00001eb095190 Zea mays
Zm00001eb435110 Zea mays
Zm00001eb437150 Zea mays
Zm00001eb442200 Zea mays

User provided reference genes

Program Settings