Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p40320 Brassica napus
A05p01010 Brassica napus
A06p35300 Brassica napus
A09p06470 Brassica napus
Aa31LG11G3720 Aethionema arabicum
Aa31LG1G28160 Aethionema arabicum
Actinidia18680 Actinidia chinensis
Actinidia28083 Actinidia chinensis
Actinidia28283 Actinidia chinensis
Ah.05g178920 Amaranthus hybridus
Ah.07g204590 Amaranthus hybridus
AL4G46260 Arabidopsis lyrata
AL6G36050 Arabidopsis lyrata
Aqoxy1G00675 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.A9G6ZW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PEG0RN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V64N20 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V960AN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y6ILE8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y6Q3ES Arachis hypogaea
AT2G46790 Arabidopsis thaliana
AT5G24470 Arabidopsis thaliana
ATR0661G529 Amborella trichopoda
ATR0661G570 Amborella trichopoda
Atru.chr12.2429 Acer truncatum
Atru.chr12.2430 Acer truncatum
Atru.chr5.772 Acer truncatum
AUR62004561 Chenopodium quinoa
AUR62005995 Chenopodium quinoa
AUR62008728 Chenopodium quinoa
AUR62022677 Chenopodium quinoa
AUR62028076 Chenopodium quinoa
BcaB04g19818 Brassica carinata
BcaB04g19820 Brassica carinata
BcaB06g29471 Brassica carinata
BcaB07g29911 Brassica carinata
BcaC02g07003 Brassica carinata
BcaC02g12639 Brassica carinata
BcaC03g17969 Brassica carinata
BcaC03g17973 Brassica carinata
BcaC04g23544 Brassica carinata
BcaNung01237 Brassica carinata
BcaNung02019 Brassica carinata
BcaNung03898 Brassica carinata
BolC2t12084H Brassica oleracea
BolC4t21769H Brassica oleracea
BolC7t44846H Brassica oleracea
BolC9t53634H Brassica oleracea
BraA02t09000Z Brassica rapa
BraA05t19101Z Brassica rapa
BraA06t26456Z Brassica rapa
BraA09t36290Z Brassica rapa
C02p60280 Brassica napus
C04p01150 Brassica napus
C04p72440 Brassica napus
C07p43210 Brassica napus
C09p07220 Brassica napus
CAN.G1174.2 Capsicum annuum
CAN.G303.21 Capsicum annuum
CAN.G3541.1 Capsicum annuum
CAN.G475.40 Capsicum annuum
CAN.G587.24 Capsicum annuum
CAN.G59.4 Capsicum annuum
CAN.G668.20 Capsicum annuum
CAN.G71.3 Capsicum annuum
CANSAT21G0770 Cannabis sativa
CANSAT56G2282 Cannabis sativa
CANSAT56G3253 Cannabis sativa
CARHR142130 Cardamine hirsuta
CARHR188940 Cardamine hirsuta
Carub.0004s2950 Capsella rubella
Carub.0006s2230 Capsella rubella
Ca_09549_v3 Cicer arietinum L.
Ca_16780_v3 Cicer arietinum L.
Cc02_g00820 Coffea canephora
CDE02G0160 Ceratophyllum demersum
CDE04G0181 Ceratophyllum demersum
CDE04G0588 Ceratophyllum demersum
CDE05G1104 Ceratophyllum demersum
CDE12G0618 Ceratophyllum demersum
CDE12G0629 Ceratophyllum demersum
Cfa003732 Carpinus fangiana
Cfa016159 Carpinus fangiana
Ciclev10019177m.g Citrus clementina
Ciclev10023753m.g Citrus clementina
CiPaw.01G082700 Carya illinoinensis
CiPaw.02G044900 Carya illinoinensis
CiPaw.05G205200 Carya illinoinensis
CiPaw.06G041200 Carya illinoinensis
ClCG01G000080 Citrullus lanatus
COL.COLO4_14371 Corchorus olitorius
COL.COLO4_23051 Corchorus olitorius
Cpa.g.sc193.20 Carica papaya
Cpa.g.sc3.152 Carica papaya
CsaV3_5G000090 Cucumis sativus L.
CSS0017104 Camellia sinensis var. sinensis
CSS0031509 Camellia sinensis var. sinensis
CSS0034102 Camellia sinensis var. sinensis
DCAR_010574 Daucus carota
DCAR_014564 Daucus carota
DCAR_020374 Daucus carota
Dinv29210 Davidia involucrata
Dinv32647 Davidia involucrata
Dinv35381 Davidia involucrata
Duzib068G1289 Durio zibethinus
Duzib084G0302 Durio zibethinus
Duzib205G0504 Durio zibethinus
Duzib268G0380 Durio zibethinus
ECA233G5217 Erigeron canadensis
EL10Ac1g00184 Beta vulgaris
EL10Ac3g05174 Beta vulgaris
Eucgr.A01405 Eucalyptus grandis
FAN01G1765 Fragaria x ananassa
FAN01G3168 Fragaria x ananassa
FAN03G1957 Fragaria x ananassa
FAN03G3105 Fragaria x ananassa
FAN06G1430 Fragaria x ananassa
FAN06G1893 Fragaria x ananassa
FAN10G0503 Fragaria x ananassa
FAN10G2060 Fragaria x ananassa
FAN10G3737 Fragaria x ananassa
FAN10G3951 Fragaria x ananassa
FvH4_7g17760 Fragaria vesca
FvH4_7g32920 Fragaria vesca
Glyma.03G261300 Glycine max
Glyma.04G228300 Glycine max
Glyma.06G136600 Glycine max
Glyma.07G049400 Glycine max
Glyma.16G018000 Glycine max
Glyma.19G260400 Glycine max
Gohir.1Z049541 Gossypium hirsutum
Gohir.A11G016500 Gossypium hirsutum
Gohir.A11G101100 Gossypium hirsutum
Gohir.A12G246400 Gossypium hirsutum
Gohir.D04G000100 Gossypium hirsutum
Gohir.D04G000180 Gossypium hirsutum
Gohir.D11G016300 Gossypium hirsutum
Gohir.D11G105700 Gossypium hirsutum
Gohir.D12G087201 Gossypium hirsutum
Gohir.D12G159466 Gossypium hirsutum
Gohir.D12G247100 Gossypium hirsutum
Gohir.D13G141501 Gossypium hirsutum
Gorai.007G017100 Gossypium raimondii
Gorai.007G113000 Gossypium raimondii
Gorai.008G265100 Gossypium raimondii
Gorai.012G001000 Gossypium raimondii
Gorai.013G158400 Gossypium raimondii
GSVIVG01027443001 Vitis vinifera
GSVIVG01038647001 Vitis vinifera
HanXRQChr08g0225931 Helianthus annuus
Haze_00298 Corylus avellana
Haze_15737 Corylus avellana
Hma1.2p1_0094F.1_g047380 Hydrangea macrophylla
Hma1.2p1_0415F.1_g148170 Hydrangea macrophylla
HPP92_007233 Vanilla planifolia
HPP92_007234 Vanilla planifolia
HPP92_007236 Vanilla planifolia
HPP92_007237 Vanilla planifolia
HPP92_009038 Vanilla planifolia
HPP92_023077 Vanilla planifolia
HPP92_025436 Vanilla planifolia
Hund09715 Selenicereus undatus
Hund16753 Selenicereus undatus
Hund21058 Selenicereus undatus
Lalb_Chr04g0261311 Lupinus albus
Lalb_Chr08g0239601 Lupinus albus
Lalb_Chr10g0100891 Lupinus albus
Lalb_Chr11g0067411 Lupinus albus
Lalb_Chr23g0271931 Lupinus albus
Lj1A1028T69 Lonicera japonica
Lj1g0014516 Lotus japonicus
Lj1g0026375 Lotus japonicus
Lj3g0026410 Lotus japonicus
Lsat_1_v5_gn_8_4341 Lactuca sativa
Manes.01G043200 Manihot esculenta
Manes.01G239500 Manihot esculenta
Manes.05G016200 Manihot esculenta
MBI04_g27241_MAGBIO Magnolia biondii
MBI12_g14504_MAGBIO Magnolia biondii
MBI17_g00900_MAGBIO Magnolia biondii
MD01G1088900 Malus domestica
MD01G1228200 Malus domestica
MD07G1299100 Malus domestica
Medtr1g098620 Medicago truncatula
Medtr3g092780 Medicago truncatula
Medtr7g118260 Medicago truncatula
Medtr8g024260 Medicago truncatula
MELO3C005921.2 Cucumis melo
Migut.F00152 Erythranthe guttata
Migut.F00987 Erythranthe guttata
MSTRG.29 Avicennia marina
MSTRG.8547 Avicennia marina
MSTRG.8612 Avicennia marina
Nitab4.5_0000319g0050 Nicotiana tabacum
Nitab4.5_0002053g0060 Nicotiana tabacum
Nitab4.5_0004249g0020 Nicotiana tabacum
Nitab4.5_0010809g0020 Nicotiana tabacum
Nn1g00448 Nelumbo nucifera
Nn2g14288 Nelumbo nucifera
Nn3g18792 Nelumbo nucifera
Nn6g34708 Nelumbo nucifera
Oeu014501.1 Olea europaea
Oeu055390.1 Olea europaea
Oeu061030.2 Olea europaea
Os09g0532400 Oryza sativa ssp. japonica
Os11g0157600 Oryza sativa ssp. japonica
Peaxi162Scf00313g00210 Petunia axillaris
Peaxi162Scf00542g00315 Petunia axillaris
Peaxi162Scf00912g00020 Petunia axillaris
PGR042G3399 Punica granatum
PGR142G3341 Punica granatum
PGSC0003DMG400000584 Solanum tuberosum
PGSC0003DMG402011297 Solanum tuberosum
Phvul.009G045000 Phaseolus vulgaris
Phvul.009G258300 Phaseolus vulgaris
Phvul.010G119700 Phaseolus vulgaris
Potri.002G179800 Populus trichocarpa
Potri.012G005900 Populus trichocarpa
Potri.014G106000 Populus trichocarpa
Potri.015G002300 Populus trichocarpa
Prupe.2G198500 Prunus persica
Prupe.2G318900 Prunus persica
Psat0s3732g0240 Pisum sativum
Psat4g164080 Pisum sativum
Psat5g071920 Pisum sativum
Psat5g200320 Pisum sativum
PSO063G7301 Papaver somniferum
PSO339G0813 Papaver somniferum
PSO384G3618 Papaver somniferum
PSO782G0646 Papaver somniferum
QL02p066074 Quercus lobata
QL08p047338 Quercus lobata
QL09p007185 Quercus lobata
RcHm_v2.0_Chr1g0361151 Rosa chinensis
RcHm_v2.0_Chr1g0382871 Rosa chinensis
Rhsim01G0180600 Rhododendron simsii
Rhsim03G0215500 Rhododendron simsii
Rhsim09G0209600 Rhododendron simsii
Sabra02G0134200 Salix brachista
Sabra12G0003400 Salix brachista
Sabra12G0007900 Salix brachista
Sabra14G0078100 Salix brachista
SalBow2G2266 Salvia bowleyana
SalBow6G5838 Salvia bowleyana
Sc01g0002150 Simmondsia chinensis
Sc13g0010470 Simmondsia chinensis
Sed0002942 Sechium edule
Sed0021704 Sechium edule
SGA_v2.0_scaffold165G38192 Striga asiatica
SGA_v2.0_scaffold18G08465 Striga asiatica
SGA_v2.0_scaffold44G16847 Striga asiatica
Solyc03g081240.3 Solanum lycopersicum
Solyc03g081270.2 Solanum lycopersicum
Solyc10g005030.4 Solanum lycopersicum
Sopen03g021970 Solanum pennellii
Sopen10g001060 Solanum pennellii
Sp2g22860 Schrenkiella parvula
Sp4g28820 Schrenkiella parvula
TAR375G0041 Trochodendron aralioides
TAR629G1568 Trochodendron aralioides
TAR633G0787 Trochodendron aralioides
TAR633G1485 Trochodendron aralioides
THA.LOC104798984 Tarenaya hassleriana
THA.LOC104803342 Tarenaya hassleriana
THA.LOC104814950 Tarenaya hassleriana
THA.LOC104817398 Tarenaya hassleriana
THA.LOC104827642 Tarenaya hassleriana
Thecc.01G333100 Theobroma cacao
Thecc.03G208800 Theobroma cacao
Thhalv10001426m.g Eutrema salsugineum
Thhalv10003894m.g Eutrema salsugineum
TPR.G19834 Trifolium pratense
TPR.G4777 Trifolium pratense
TWI14G0272 Tripterygium wilfordii
TWI23G0042 Tripterygium wilfordii
TWI59G1255 Tripterygium wilfordii
unitig_0.g2445 Utricularia gibba
unitig_37.g11994 Utricularia gibba
unitig_52.g17704 Utricularia gibba
unitig_748.g7277 Utricularia gibba
unitig_92.g28241 Utricularia gibba
vmacro06442 Vaccinium macrocarpon
vmacro10158 Vaccinium macrocarpon
vmacro12638 Vaccinium macrocarpon
vmacro22783 Vaccinium macrocarpon
VMungo0331G1991 Vigna mungo
VMungo1309G1410 Vigna mungo
VMungo1309G2840 Vigna mungo
Zm00001eb092230 Zea mays
Zm00001eb103490 Zea mays
Zm00001eb198960 Zea mays
Zm00001eb319590 Zea mays

User provided reference genes

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