Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p42130 Brassica napus
A03p35820 Brassica napus
A05p39320 Brassica napus
A09p16950 Brassica napus
A09p30180 Brassica napus
Aa31LG3G2260 Aethionema arabicum
Aa31LG9G14430 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.2373 Anthoceros agrestis
Actinidia16739 Actinidia chinensis
Actinidia19495 Actinidia chinensis
Actinidia26047 Actinidia chinensis
Actinidia39101 Actinidia chinensis
Ah.08g216460 Amaranthus hybridus
AL2G15524 Arabidopsis lyrata
AL3G21030 Arabidopsis lyrata
AL6G42330 Arabidopsis lyrata
Aqoxy4G02896 Aquilegia oxysepala
Aqoxy7G01175 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.AJY7TW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C5MJY3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.J6JJPP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MFI07V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X1E2Z0 Arachis hypogaea
AT1G60970 Arabidopsis thaliana
AT3G09800 Arabidopsis thaliana
AT4G08520 Arabidopsis thaliana
ATR0012G064 Amborella trichopoda
Atru.chr1.3784 Acer truncatum
Atru.chr10.1371 Acer truncatum
AUR62001516 Chenopodium quinoa
AUR62009852 Chenopodium quinoa
BcaB01g01351 Brassica carinata
BcaB03g11587 Brassica carinata
BcaB04g21236 Brassica carinata
BcaB07g31255 Brassica carinata
BcaC04g20909 Brassica carinata
BcaC05g29486 Brassica carinata
BcaC05g29702 Brassica carinata
BcaC09g48125 Brassica carinata
BolC1t05432H Brassica oleracea
BolC3t16618H Brassica oleracea
BolC5t34485H Brassica oleracea
BolC9t54997H Brassica oleracea
BolC9t56641H Brassica oleracea
BraA01t04281Z Brassica rapa
BraA03t12754Z Brassica rapa
BraA05t22714Z Brassica rapa
BraA09t37332Z Brassica rapa
BraA09t38583Z Brassica rapa
C03p43470 Brassica napus
C05p58320 Brassica napus
C09p20990 Brassica napus
C09p38050 Brassica napus
CAN.G257.36 Capsicum annuum
CAN.G862.10 Capsicum annuum
CANSAT35G1000 Cannabis sativa
CANSAT56G0732 Cannabis sativa
CARHR084250 Cardamine hirsuta
CARHR259560 Cardamine hirsuta
Carub.0002s0428 Capsella rubella
Carub.0003s0889 Capsella rubella
Carub.0006s2706 Capsella rubella
Ca_03746_v3 Cicer arietinum L.
Ca_04107_v3 Cicer arietinum L.
Ca_04116_v3 Cicer arietinum L.
Ca_11358_v3 Cicer arietinum L.
Ca_23335_v3 Cicer arietinum L.
CBR_g54035 Chara braunii
Cc00_g27320 Coffea canephora
Cc04_g01720 Coffea canephora
CDE06G2840 Ceratophyllum demersum
CDE09G0115 Ceratophyllum demersum
CDE11G0570 Ceratophyllum demersum
Cfa004261 Carpinus fangiana
Cfa025078 Carpinus fangiana
Ciclev10016911m.g Citrus clementina
Ciclev10026773m.g Citrus clementina
CiPaw.01G221900 Carya illinoinensis
CiPaw.02G137700 Carya illinoinensis
CiPaw.08G158900 Carya illinoinensis
CiPaw.09G127900 Carya illinoinensis
CiPaw.10G094000 Carya illinoinensis
ClCG01G024310 Citrullus lanatus
ClCG03G007120 Citrullus lanatus
COL.COLO4_03417 Corchorus olitorius
COL.COLO4_07488 Corchorus olitorius
COL.COLO4_15524 Corchorus olitorius
COL.COLO4_16754 Corchorus olitorius
COL.COLO4_30684 Corchorus olitorius
Cpa.g.sc128.54 Carica papaya
Cpa.g.sc25.74 Carica papaya
Cre08.g371450 Chlamydomonas reinhardtii
CsaV3_1G032700 Cucumis sativus L.
CsaV3_6G051450 Cucumis sativus L.
CSS0021005 Camellia sinensis var. sinensis
CSS0024138 Camellia sinensis var. sinensis
DCAR_003950 Daucus carota
DCAR_007630 Daucus carota
DCAR_007906 Daucus carota
Dinv04014 Davidia involucrata
Dinv30697 Davidia involucrata
Dinv32293 Davidia involucrata
Dinv37896 Davidia involucrata
Duzib160G0015 Durio zibethinus
Duzib192G0255 Durio zibethinus
Duzib192G0649 Durio zibethinus
Duzib205G0557 Durio zibethinus
Duzib235G0609 Durio zibethinus
Duzib235G1265 Durio zibethinus
ECA236G2670 Erigeron canadensis
ECA247G1876 Erigeron canadensis
EL10Ac7g16369 Beta vulgaris
Eucgr.E02362 Eucalyptus grandis
Eucgr.F03148 Eucalyptus grandis
FAN02G4488 Fragaria x ananassa
FAN05G0741 Fragaria x ananassa
FAN11G0252 Fragaria x ananassa
FAN11G1322 Fragaria x ananassa
FAN14G4027 Fragaria x ananassa
FAN16G2417 Fragaria x ananassa
FAN21G3421 Fragaria x ananassa
FAN21G3475 Fragaria x ananassa
FAN25G0833 Fragaria x ananassa
FAN25G1594 Fragaria x ananassa
FAN25G2206 Fragaria x ananassa
FvH4_3g06220 Fragaria vesca
FvH4_3g06280 Fragaria vesca
FvH4_6g33990 Fragaria vesca
Glyma.07G008000 Glycine max
Glyma.08G190800 Glycine max
Glyma.09G019500 Glycine max
Glyma.13G348700 Glycine max
Glyma.15G125800 Glycine max
Gohir.A06G191400 Gossypium hirsutum
Gohir.A06G198100 Gossypium hirsutum
Gohir.A08G149300 Gossypium hirsutum
Gohir.A09G078300 Gossypium hirsutum
Gohir.D06G199800 Gossypium hirsutum
Gohir.D06G205500 Gossypium hirsutum
Gohir.D08G170300 Gossypium hirsutum
Gohir.D09G078800 Gossypium hirsutum
Gorai.004G177800 Gossypium raimondii
Gorai.006G093800 Gossypium raimondii
Gorai.010G232800 Gossypium raimondii
Gorai.010G239800 Gossypium raimondii
GSVIVG01016804001 Vitis vinifera
GSVIVG01021391001 Vitis vinifera
HanXRQChr02g0031771 Helianthus annuus
HanXRQChr04g0118551 Helianthus annuus
HanXRQChr15g0480061 Helianthus annuus
Haze_05527 Corylus avellana
Haze_15140 Corylus avellana
Haze_15996 Corylus avellana
Hma1.2p1_0015F.1_g010290 Hydrangea macrophylla
Hma1.2p1_1128F.1_g259740 Hydrangea macrophylla
HPP92_019993 Vanilla planifolia
Hund17155 Selenicereus undatus
Hund18702 Selenicereus undatus
Hund20823 Selenicereus undatus
Lalb_Chr01g0013461 Lupinus albus
Lalb_Chr18g0057711 Lupinus albus
Lalb_Chr22g0351851 Lupinus albus
Lalb_Chr25g0280851 Lupinus albus
Lj2A310T42 Lonicera japonica
Lj3g0000405 Lotus japonicus
Lj5A41T71 Lonicera japonica
Lj6g0019675 Lotus japonicus
Lsat_1_v5_gn_1_113340 Lactuca sativa
Lsat_1_v5_gn_1_35740 Lactuca sativa
Lsat_1_v5_gn_5_135500 Lactuca sativa
Lsat_1_v5_gn_7_30780 Lactuca sativa
Lsat_1_v5_gn_8_126200 Lactuca sativa
Manes.04G141100 Manihot esculenta
Manes.11G024200 Manihot esculenta
Manes.15G118000 Manihot esculenta
Manes.17G065900 Manihot esculenta
Mapoly0005s0013 Marchantia polymorpha
MBI05_g22913_MAGBIO Magnolia biondii
MBI05_g35600_MAGBIO Magnolia biondii
MBI05_g45251_MAGBIO Magnolia biondii
MBI14_g35850_MAGBIO Magnolia biondii
MCO13G132 Micromonas commoda
MD05G1290800 Malus domestica
MD09G1190300 Malus domestica
MD10G1266600 Malus domestica
MD16G1203300 Malus domestica
MD17G1173400 Malus domestica
Medtr0350s0010 Medicago truncatula
Medtr2g028750 Medicago truncatula
Medtr7g009640 Medicago truncatula
Medtr8g017630 Medicago truncatula
Medtr8g018030 Medicago truncatula
MELO3C002712.2 Cucumis melo
MELO3C007161.2 Cucumis melo
Migut.D00958 Erythranthe guttata
Migut.H01384 Erythranthe guttata
Migut.I01040 Erythranthe guttata
MSTRG.13243 Avicennia marina
MSTRG.22571 Avicennia marina
MSTRG.7464 Avicennia marina
Nitab4.5_0000189g0310 Nicotiana tabacum
Nitab4.5_0000549g0090 Nicotiana tabacum
Nitab4.5_0005003g0130 Nicotiana tabacum
Nitab4.5_0007622g0060 Nicotiana tabacum
Nitab4.5_0008782g0060 Nicotiana tabacum
Nitab4.5_0010964g0020 Nicotiana tabacum
Nn3g19566 Nelumbo nucifera
Nn6g33265 Nelumbo nucifera
Nn8g38803 Nelumbo nucifera
Oeu002493.1 Olea europaea
Oeu021514.2 Olea europaea
Oeu046861.1 Olea europaea
Os01g0838800 Oryza sativa ssp. japonica
Os02g0317400 Oryza sativa ssp. japonica
Os05g0461000 Oryza sativa ssp. japonica
Peaxi162Scf00038g01634 Petunia axillaris
Peaxi162Scf00482g00036 Petunia axillaris
PGR031G0020 Punica granatum
PGR119G0180 Punica granatum
PGSC0003DMG400002579 Solanum tuberosum
PGSC0003DMG400003068 Solanum tuberosum
PGSC0003DMG400033637 Solanum tuberosum
Phvul.005G158000 Phaseolus vulgaris
Phvul.006G132400 Phaseolus vulgaris
Phvul.010G137000 Phaseolus vulgaris
Potri.001G197200 Populus trichocarpa
Potri.001G352900 Populus trichocarpa
Potri.003G043200 Populus trichocarpa
Pp3c12_7940 Physcomitrium patens
Pp3c24_8180 Physcomitrium patens
Pp3c4_17280 Physcomitrium patens
Pp3c8_6980 Physcomitrium patens
PRCOL_00000037 Prasinoderma coloniale
Prupe.3G046200 Prunus persica
Prupe.4G074900 Prunus persica
Psat1g170160 Pisum sativum
Psat3g196600 Pisum sativum
Psat4g187400 Pisum sativum
PSO017G5023 Papaver somniferum
PSO063G2873 Papaver somniferum
PSO478G1294 Papaver somniferum
PSO832G2277 Papaver somniferum
QL05p009718 Quercus lobata
QL05p009726 Quercus lobata
QL05p060155 Quercus lobata
RcHm_v2.0_Chr2g0124081 Rosa chinensis
RcHm_v2.0_Chr2g0143981 Rosa chinensis
RcHm_v2.0_Chr5g0013031 Rosa chinensis
RcHm_v2.0_Chr5g0013101 Rosa chinensis
RcHm_v2.0_Chr5g0031791 Rosa chinensis
RcHm_v2.0_Chr5g0057151 Rosa chinensis
RcHm_v2.0_Chr5g0057191 Rosa chinensis
RcHm_v2.0_Chr7g0236651 Rosa chinensis
Rhsim02G0154700 Rhododendron simsii
Rhsim12G0207700 Rhododendron simsii
Sabra01G0143600 Salix brachista
Sabra03G0023000 Salix brachista
SalBow7G4090 Salvia bowleyana
SalBow7G4637 Salvia bowleyana
SalBow8G1632 Salvia bowleyana
Sc12g0010360 Simmondsia chinensis
Sc15g0000260 Simmondsia chinensis
Sed0005470 Sechium edule
Sed0009708 Sechium edule
Sed0021080 Sechium edule
SEGI_02481 Sequoiadendron giganteum
SGA_v2.0_scaffold106G30622 Striga asiatica
SGA_v2.0_scaffold122G33362 Striga asiatica
SGA_v2.0_scaffold71G23806 Striga asiatica
SHI54601 Sapria himalayana
SMO141G0120 Selaginella moellendorffii
Solyc02g071170.3 Solanum lycopersicum
Solyc03g121800.4 Solanum lycopersicum
Solyc12g044910.2 Solanum lycopersicum
Sopen02g020250 Solanum pennellii
Sopen03g040610 Solanum pennellii
Sopen12g023270 Solanum pennellii
Sp2g03610 Schrenkiella parvula
Sp3g08130 Schrenkiella parvula
Sp6g09340 Schrenkiella parvula
TAR383G0663 Trochodendron aralioides
TAR626G1401 Trochodendron aralioides
TAR629G1114 Trochodendron aralioides
THA.LOC104812237 Tarenaya hassleriana
THA.LOC104813954 Tarenaya hassleriana
Thecc.03G319300 Theobroma cacao
Thecc.06G114600 Theobroma cacao
Thecc.06G156500 Theobroma cacao
Thhalv10021608m.g Eutrema salsugineum
Thhalv10023718m.g Eutrema salsugineum
Thhalv10029008m.g Eutrema salsugineum
TPR.G22028 Trifolium pratense
TPR.G27675 Trifolium pratense
TPR.G32064 Trifolium pratense
TPR.G4303 Trifolium pratense
TWI09G1013 Tripterygium wilfordii
TWI31G0966 Tripterygium wilfordii
TWI73G0835 Tripterygium wilfordii
unitig_32.g11571 Utricularia gibba
unitig_748.g7464 Utricularia gibba
vmacro22234 Vaccinium macrocarpon
vmacro23043 Vaccinium macrocarpon
VMungo0331G1453 Vigna mungo
VMungo0540G0017 Vigna mungo
VMungo1080G1761 Vigna mungo
Zm00001eb289710 Zea mays
Zm00001eb315530 Zea mays
Zm00001eb351410 Zea mays

User provided reference genes

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