Gene: AT1G60970

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G60970
  • Transcript Identifier AT1G60970.1
  • Gene Type Coding gene
  • Location Chr1 : 22448008-22449387 : negative

Gene Family Information

  • ID HOM05D002096
  • #Genes/#Species 318/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G60970.1
  • uniprot Q940S5

Descriptions

  • Description SNARE-like superfamily protein
  • Computational description SNARE-like superfamily protein; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: clathrin vesicle coat; EXPRESSED IN: leaf whorl, sperm cell, pedicel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT3G09800.1); Has 621 Blast hits to 621 proteins in 219 species: Archae - 0; Bacteria - 0; Metazoa - 227; Fungi - 139; Plants - 149; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006890
IEA
GOA Databaseretrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0006890
IBA
Gene Ontologyretrograde vesicle-mediated transport, Golgi to endoplasmic reticulum1
GO:0006890
IEA
InterProretrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0016192
IEA
GOA Databasevesicle-mediated transport
GO:0015031
IEA
GOA Databaseprotein transport
GO:0006891
IBA
Gene Ontologyintra-Golgi vesicle-mediated transport1
GO:0006886
IBA
Gene Ontologyintracellular protein transport1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005794
IEA
GOA DatabaseGolgi apparatus
GO:0030126
IEA
GOA DatabaseCOPI vesicle coat
GO:0030126
IBA
Gene OntologyCOPI vesicle coat1
GO:0030126
IEA
InterProCOPI vesicle coat
GO:0016020
IEA
GOA Databasemembrane
GO:0031410
IEA
GOA Databasecytoplasmic vesicle
GO:0005634
HDA
Gene Ontologynucleus2
GO:0005737
IEA
GOA Databasecytoplasm
GO:0000139
IEA
GOA DatabaseGolgi membrane
GO:0030663
IEA
GOA DatabaseCOPI-coated vesicle membrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011012 Longin-like domain superfamily
IPR022775 AP complex, mu/sigma subunit
IPR039652 Coatomer subunit zeta
Mapman id Description
22.2.1.1.4.4 Vesicle trafficking.Golgi-ER retrograde trafficking.Coat protein I (COPI) coatomer machinery.coat protein complex.cargo adaptor F-subcomplex.subunit zeta