Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p07570 Brassica napus
A03p33030 Brassica napus
A05p45260 Brassica napus
Aa31LG10G4810 Aethionema arabicum
Aa31LG11G13480 Aethionema arabicum
Aa31LG5G13070 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.2398 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.371 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.2668 Anthoceros agrestis
Actinidia17638 Actinidia chinensis
Actinidia20620 Actinidia chinensis
AL1G55560 Arabidopsis lyrata
AL3G11930 Arabidopsis lyrata
Aqoxy1G00846 Aquilegia oxysepala
Aqoxy3G00263 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.9ES8Y8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EIW12T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FQEN2A Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PA2UTS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QAJ233 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UBQ2DA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X3VFTN Arachis hypogaea
AT1G48830 Arabidopsis thaliana
AT3G02560 Arabidopsis thaliana
AT5G16130 Arabidopsis thaliana
ATR0584G161 Amborella trichopoda
ATR0705G025 Amborella trichopoda
Atru.chr1.1687 Acer truncatum
Atru.chr9.842 Acer truncatum
AUR62009003 Chenopodium quinoa
AUR62023299 Chenopodium quinoa
BcaB01g05002 Brassica carinata
BcaC01g04437 Brassica carinata
BcaC01g04560 Brassica carinata
BcaC03g18469 Brassica carinata
BcaC04g24228 Brassica carinata
BcaC05g30367 Brassica carinata
BcaC09g47710 Brassica carinata
BcaNung05405 Brassica carinata
BcaNung07013 Brassica carinata
BNapus_Darmor_BZH_scaffold_122p00060 Brassica napus
BNapus_Darmor_BZH_scaffold_99p00080 Brassica napus
BolC1t05895H Brassica oleracea
BolC3t13376H Brassica oleracea
BolC3t16282H Brassica oleracea
BolC5t35075H Brassica oleracea
BolC9t58929H Brassica oleracea
BraA03t10085Z Brassica rapa
BraA03t12470Z Brassica rapa
BraA05t23134Z Brassica rapa
BraA10t44359Z Brassica rapa
BraSC246t45834Z Brassica rapa
C03p08800 Brassica napus
C03p40180 Brassica napus
C09p75780 Brassica napus
CAN.G1425.11 Capsicum annuum
CANSAT11G0264 Cannabis sativa
CANSAT78G0579 Cannabis sativa
CANSAT80G0553 Cannabis sativa
CARHR038800 Cardamine hirsuta
CARHR038830 Cardamine hirsuta
CARHR076570 Cardamine hirsuta
CARHR197170 Cardamine hirsuta
Carub.0001s3797 Capsella rubella
Carub.0003s0168 Capsella rubella
Carub.0006s1432 Capsella rubella
Carub.0055s0001 Capsella rubella
Ca_17310_v3 Cicer arietinum L.
Ca_25481_v3 Cicer arietinum L.
Ca_25510_v3 Cicer arietinum L.
Ca_29726_v3 Cicer arietinum L.
CBR_g11949 Chara braunii
CBR_g27743 Chara braunii
CBR_g51369 Chara braunii
Cc00_g11600 Coffea canephora
Cc02_g25310 Coffea canephora
Cc11_g02560 Coffea canephora
CDE03G0412 Ceratophyllum demersum
CDE06G0206 Ceratophyllum demersum
CDE06G1943 Ceratophyllum demersum
CDE12G0119 Ceratophyllum demersum
Cfa007921 Carpinus fangiana
Cfa017855 Carpinus fangiana
Cfa019753 Carpinus fangiana
Cfa019754 Carpinus fangiana
Ciclev10012856m.g Citrus clementina
Ciclev10022404m.g Citrus clementina
CiPaw.03G061700 Carya illinoinensis
CiPaw.04G042400 Carya illinoinensis
CiPaw.16G087600 Carya illinoinensis
ClCG04G011080 Citrullus lanatus
ClCG06G014720 Citrullus lanatus
COL.COLO4_04898 Corchorus olitorius
COL.COLO4_09338 Corchorus olitorius
COL.COLO4_23450 Corchorus olitorius
COL.COLO4_27617 Corchorus olitorius
Cpa.g.sc2.174 Carica papaya
Cpa.g.sc282.5 Carica papaya
Cpa.g.sc3.500 Carica papaya
Cre12.g498900 Chlamydomonas reinhardtii
CsaV3_1G003930 Cucumis sativus L.
CsaV3_1G006670 Cucumis sativus L.
CSS0014416 Camellia sinensis var. sinensis
CSS0018529 Camellia sinensis var. sinensis
CSS0041959 Camellia sinensis var. sinensis
DCAR_017189 Daucus carota
DCAR_025913 Daucus carota
Dinv15689 Davidia involucrata
Dinv28116 Davidia involucrata
Dinv33950 Davidia involucrata
Dinv34821 Davidia involucrata
Duzib068G0753 Durio zibethinus
Duzib084G0967 Durio zibethinus
Duzib138G1223 Durio zibethinus
Duzib205G1088 Durio zibethinus
ECA232G0616 Erigeron canadensis
ECA246G3741 Erigeron canadensis
EL10Ac2g04562 Beta vulgaris
Eucgr.B00732 Eucalyptus grandis
Eucgr.F02497 Eucalyptus grandis
FAN04G0890 Fragaria x ananassa
FAN07G0960 Fragaria x ananassa
FAN08G0067 Fragaria x ananassa
FAN12G2692 Fragaria x ananassa
FAN12G2980 Fragaria x ananassa
FAN13G0953 Fragaria x ananassa
FAN13G1540 Fragaria x ananassa
FAN17G0036 Fragaria x ananassa
FAN18G2468 Fragaria x ananassa
FAN18G3724 Fragaria x ananassa
FAN22G0496 Fragaria x ananassa
FvH4_4g09890 Fragaria vesca
FvH4_5g11920 Fragaria vesca
Glyma.05G238000 Glycine max
Glyma.07G092900 Glycine max
Glyma.08G045100 Glycine max
Glyma.09G183300 Glycine max
Glyma.13G045800 Glycine max
Glyma.19G049200 Glycine max
Gohir.A07G066600 Gossypium hirsutum
Gohir.A09G048500 Gossypium hirsutum
Gohir.A09G176900 Gossypium hirsutum
Gohir.A11G005300 Gossypium hirsutum
Gohir.D07G071100 Gossypium hirsutum
Gohir.D09G049600 Gossypium hirsutum
Gohir.D09G172500 Gossypium hirsutum
Gohir.D11G004600 Gossypium hirsutum
Gorai.001G075100 Gossypium raimondii
Gorai.006G060200 Gossypium raimondii
Gorai.006G194400 Gossypium raimondii
Gorai.007G005600 Gossypium raimondii
GSVIVG01008307001 Vitis vinifera
GSVIVG01016480001 Vitis vinifera
GSVIVG01031018001 Vitis vinifera
HanXRQChr09g0271401 Helianthus annuus
HanXRQChr12g0376551 Helianthus annuus
HanXRQChr15g0471481 Helianthus annuus
HanXRQChr16g0503401 Helianthus annuus
Haze_14156 Corylus avellana
Haze_18693 Corylus avellana
Haze_18943 Corylus avellana
Haze_26413 Corylus avellana
Hma1.2p1_0136F.1_g062280 Hydrangea macrophylla
Hma1.2p1_0653F.1_g196200 Hydrangea macrophylla
Hma1.2p1_1109F.1_g258030 Hydrangea macrophylla
HPP92_006777 Vanilla planifolia
Hund13712 Selenicereus undatus
Hund16158 Selenicereus undatus
Lalb_Chr05g0222441 Lupinus albus
Lalb_Chr14g0371091 Lupinus albus
Lalb_Chr22g0353141 Lupinus albus
Lalb_Chr24g0397861 Lupinus albus
Lj1g0021392 Lotus japonicus
Lj2A442T44 Lonicera japonica
Lj2g0004171 Lotus japonicus
Lj4A191T49 Lonicera japonica
Lj4g0000244 Lotus japonicus
Lsat_1_v5_gn_1_11640 Lactuca sativa
Lsat_1_v5_gn_3_79720 Lactuca sativa
Lsat_1_v5_gn_4_105580 Lactuca sativa
Manes.08G065300 Manihot esculenta
Manes.12G045700 Manihot esculenta
Manes.12G045800 Manihot esculenta
Manes.17G014900 Manihot esculenta
Mapoly0060s0109 Marchantia polymorpha
MBI02_g18408_MAGBIO Magnolia biondii
MBI02_g45929_MAGBIO Magnolia biondii
MBI09_g39171_MAGBIO Magnolia biondii
MBI16_g23454_MAGBIO Magnolia biondii
MCO04G201 Micromonas commoda
MD01G1071000 Malus domestica
MD06G1217300 Malus domestica
MD10G1146600 Malus domestica
MD13G1256100 Malus domestica
MD14G1227600 Malus domestica
Medtr6g021670 Medicago truncatula
Medtr6g085000 Medicago truncatula
MELO3C002091.2 Cucumis melo
MELO3C017316.2 Cucumis melo
Migut.L00321 Erythranthe guttata
MSTRG.15297 Avicennia marina
MSTRG.23576 Avicennia marina
MSTRG.3569 Avicennia marina
Nitab4.5_0000208g0340 Nicotiana tabacum
Nitab4.5_0001194g0080 Nicotiana tabacum
Nitab4.5_0001426g0020 Nicotiana tabacum
Nitab4.5_0001536g0080 Nicotiana tabacum
Nitab4.5_0002906g0100 Nicotiana tabacum
Nitab4.5_0003997g0010 Nicotiana tabacum
Nitab4.5_0009087g0050 Nicotiana tabacum
Nn2g11231 Nelumbo nucifera
Nn3g17885 Nelumbo nucifera
Nn3g19028 Nelumbo nucifera
Nn4g23890 Nelumbo nucifera
Oeu008430.1 Olea europaea
Oeu012568.1 Olea europaea
Oeu030788.1 Olea europaea
Os03g0297100 Oryza sativa ssp. japonica
Os03g0297300 Oryza sativa ssp. japonica
Os05g0346300 Oryza sativa ssp. japonica
Peaxi162Scf00015g00109 Petunia axillaris
Peaxi162Scf00332g00004 Petunia axillaris
Peaxi162Scf00634g00325 Petunia axillaris
PGR004G1124 Punica granatum
PGR083G1216 Punica granatum
PGR142G4067 Punica granatum
PGSC0003DMG400005385 Solanum tuberosum
PGSC0003DMG400005642 Solanum tuberosum
PGSC0003DMG400028781 Solanum tuberosum
Phvul.002G317200 Phaseolus vulgaris
Phvul.004G065700 Phaseolus vulgaris
Phvul.004G156132 Phaseolus vulgaris
Potri.004G099200 Populus trichocarpa
Potri.006G087900 Populus trichocarpa
Potri.016G100400 Populus trichocarpa
Potri.017G115400 Populus trichocarpa
Pp3c20_1360 Physcomitrium patens
Pp3c23_18280 Physcomitrium patens
Pp3c24_18220 Physcomitrium patens
Pp3c8_22480 Physcomitrium patens
PRCOL_00006379 Prasinoderma coloniale
Prupe.1G086800 Prunus persica
Prupe.3G016800 Prunus persica
Prupe.5G222500 Prunus persica
Psat1g037040 Pisum sativum
Psat1g039200 Pisum sativum
PSO017G2010 Papaver somniferum
PSO210G3293 Papaver somniferum
PSO210G5620 Papaver somniferum
PSO478G1939 Papaver somniferum
QL02p051290 Quercus lobata
QL10p025602 Quercus lobata
RcHm_v2.0_Chr4g0402641 Rosa chinensis
RcHm_v2.0_Chr7g0185571 Rosa chinensis
Rhsim08G0082400 Rhododendron simsii
Rhsim10G0067500 Rhododendron simsii
SalBow3G4156 Salvia bowleyana
SalBow5G0204 Salvia bowleyana
Sc10g0001160 Simmondsia chinensis
Sc11g0008350 Simmondsia chinensis
Sed0003836 Sechium edule
Sed0018729 Sechium edule
Sed0022701 Sechium edule
Sed0023059 Sechium edule
SEGI_14850 Sequoiadendron giganteum
SEGI_25467 Sequoiadendron giganteum
SEGI_26584 Sequoiadendron giganteum
SGA_v2.0_scaffold33G13507 Striga asiatica
SGA_v2.0_scaffold49G18109 Striga asiatica
SGA_v2.0_scaffold73G24478 Striga asiatica
SHI20395 Sapria himalayana
SHI28543 Sapria himalayana
SMO134G0119 Selaginella moellendorffii
Solyc03g119360.3 Solanum lycopersicum
Solyc06g069090.3 Solanum lycopersicum
Solyc12g036450.3 Solanum lycopersicum
Sopen00g008170 Solanum pennellii
Sopen03g038230 Solanum pennellii
Sopen05g025560 Solanum pennellii
Sopen06g026370 Solanum pennellii
Sp1g35720 Schrenkiella parvula
Sp3g01600 Schrenkiella parvula
Sp6g28010 Schrenkiella parvula
TAR371G0237 Trochodendron aralioides
TAR622G0881 Trochodendron aralioides
TAR629G2707 Trochodendron aralioides
THA.LOC104802438 Tarenaya hassleriana
THA.LOC104809832 Tarenaya hassleriana
THA.LOC104820390 Tarenaya hassleriana
THA.LOC104820946 Tarenaya hassleriana
THA.LOC104827158 Tarenaya hassleriana
Thecc.01G286300 Theobroma cacao
Thecc.03G037000 Theobroma cacao
Thecc.04G133300 Theobroma cacao
Thhalv10011801m.g Eutrema salsugineum
Thhalv10014759m.g Eutrema salsugineum
Thhalv10021574m.g Eutrema salsugineum
TPR.G21633 Trifolium pratense
TPR.G9004 Trifolium pratense
TWI60G1243 Tripterygium wilfordii
TWI60G1490 Tripterygium wilfordii
TWI74G0345 Tripterygium wilfordii
TWI81G0282 Tripterygium wilfordii
TWI81G0607 Tripterygium wilfordii
unitig_32.g11888 Utricularia gibba
unitig_88.g27805 Utricularia gibba
vmacro05552 Vaccinium macrocarpon
vmacro18075 Vaccinium macrocarpon
VMungo0251G2322 Vigna mungo
VMungo0464G0218 Vigna mungo
VMungo0464G0509 Vigna mungo
Zm00001eb013750 Zea mays
Zm00001eb143130 Zea mays
Zm00001eb396730 Zea mays
Zm00001eb418770 Zea mays

User provided reference genes

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